Files in sheejamk/DecisionAnalysisModel
Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data

.Rbuildignore

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.travis.yml

DESCRIPTION

NAMESPACE

README.md

codecov.yml

cran-comments.md

data-raw/Promis-8a-scoring-table.csv

data-raw/adl_scoring.R data-raw/blank.R

data-raw/blank.csv

data-raw/cost_matrix_sample.R

data-raw/cost_matrix_sample.csv

data-raw/datasets.R

data-raw/patient_m1.txt

data-raw/riskscore.txt

data-raw/table_param.R

data-raw/table_param.csv

data-raw/trace_matrix_sample.R

data-raw/trace_matrix_sample.csv

data-raw/trial_data.R

data-raw/trial_data.csv

data-raw/utility_matrix_sample.R

data-raw/utility_matrix_sample.csv

data/adl_scoring.rda

data/blank.rda

data/cost_data.rda

data/table_param.rda

data/trace_data.rda

data/trial_data.rda

data/utility_data.rda

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docs/reference/Cost-effectiveness acceptability curve.pdf docs/reference/Cox_Cumhazard_status_sex.pdf docs/reference/Cox_Cumhazard_status_x.pdf docs/reference/Cox_Survivial function_status_sex.pdf docs/reference/Cox_Survivial function_status_x.pdf docs/reference/Cox_residuals_status_sex.pdf docs/reference/Cox_residuals_status_x.pdf docs/reference/Coxph_survival_diganostic_status_sex.pdf docs/reference/Coxph_survival_diganostic_status_x.pdf docs/reference/Deterministic sensitivity analysis NMB.pdf docs/reference/Histogram of Cost.pdf docs/reference/Histogram of ICER.pdf docs/reference/Histogram of NMB.pdf docs/reference/Histogram of Utility.pdf docs/reference/Model_states.pdf docs/reference/Probabilistic sensitivity analysis_ICER_NMB.pdf

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docs/reference/assign_parameters.html

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docs/reference/calculate_icer_nmb.html

docs/reference/check_estimate_required_params.html

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docs/reference/check_list_markov_models.html

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docs/reference/get_cost_inpatient_description.html

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inst/extdata/LifeTable_USA_Mx_2015.csv

inst/extdata/LifeTable_USA_Mx_2015_agerange.csv

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inst/extdata/Med_calc_noconvfactorcol.xlsx

inst/extdata/Med_calc_nodrugcol.xlsx

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inst/extdata/Med_calc_nounitcol.xlsx

inst/extdata/Med_calc_testNA.xlsx

inst/extdata/Med_calc_unit_notright.xlsx

inst/extdata/NHS_costs_2019_AandE.xlsx

inst/extdata/NHS_costs_2019_AandE_nocode.csv

inst/extdata/National_schedule_of_NHS_costs_2019.csv

inst/extdata/National_schedule_of_NHS_costs_2019_AandE.csv

inst/extdata/National_schedule_of_NHS_costs_2019_error.csv

inst/extdata/National_schedule_of_NHS_costs_2019_error.xlsx

inst/extdata/average_unit_costs_med.csv

inst/extdata/average_unit_costs_med_brand.csv

inst/extdata/average_unit_costs_med_brand_bottlevol_notmatching.csv

inst/extdata/average_unit_costs_med_brand_brandcolname_error.csv

inst/extdata/average_unit_costs_med_brand_errorbrand.csv

inst/extdata/average_unit_costs_med_brand_nodosage.csv

inst/extdata/average_unit_costs_med_brand_nomatchingdose.csv

inst/extdata/average_unit_costs_med_brand_notcostedperbottle.csv

inst/extdata/average_unit_costs_med_brand_nounitcostcol.csv

inst/extdata/average_unit_costs_med_brand_sizecol_error.csv

inst/extdata/average_unit_costs_med_brand_unitnotidentify.csv

inst/extdata/average_unit_costs_med_formcolname_error.csv

inst/extdata/average_unit_costs_med_namecolname_error.csv

inst/extdata/average_unit_costs_med_nounitcost.csv

inst/extdata/binary.csv

inst/extdata/costs_resource_use.csv

inst/extdata/costs_resource_use_nohos.csv

inst/extdata/costs_resource_use_nonameres.csv

inst/extdata/costs_resource_use_nounitcostcol.csv

inst/extdata/costs_resource_use_unitexpressed_notright.csv

inst/extdata/culcita_data.csv

inst/extdata/data.txt

inst/extdata/data_linear_mixed_model.csv

inst/extdata/desktop.ini

inst/extdata/eq5d.RDS

inst/extdata/glmm_data.csv

inst/extdata/hsb2.dta

inst/extdata/lm_dat.csv

inst/extdata/lmmdata.csv

inst/extdata/medication.xlsx

inst/extdata/medication_all.xlsx

inst/extdata/medication_all_no_tabname.xlsx

inst/extdata/medication_liq.xlsx

inst/extdata/medication_liq_bottlevol_unitdiff.xlsx

inst/extdata/medication_liq_codes.xlsx

inst/extdata/medication_liq_codes_namenotsameasdose.xlsx

inst/extdata/medication_liq_codes_notprep.xlsx

inst/extdata/medication_liq_liqlastsbeforeday.xlsx

inst/extdata/medication_liq_nonamecol.xlsx

inst/extdata/medication_namemissing.xlsx

inst/extdata/medication_nopatchname.xlsx

inst/extdata/medication_with_codes.xlsx

inst/extdata/nocol_parameter.csv

inst/extdata/nostrategy.csv

inst/extdata/patient_adm_cost_EL.xlsx

inst/extdata/patient_adm_cost_NEL.xlsx

inst/extdata/resource_use_ae_ip.csv

inst/extdata/resource_use_ae_ip_extranumuse.csv

inst/extdata/resource_use_ae_ip_lengthtypecodediff.csv

inst/extdata/resource_use_ae_ip_lessnumuse.csv

inst/extdata/resource_use_ae_ip_nonumusecol.csv

inst/extdata/resource_use_ae_ip_notypecol.csv

inst/extdata/resource_use_hc_2.csv

inst/extdata/resource_use_hc_2_codes.csv

inst/extdata/resource_use_hc_2_noname.csv

inst/extdata/resource_use_hc_2_unitlength.csv

inst/extdata/resource_use_hc_ip.csv

inst/extdata/resource_use_hc_ip_el_missing.csv

inst/extdata/resource_use_hc_ip_nocol.csv

inst/extdata/resource_use_hc_ip_nocol_numuse.csv

inst/extdata/resource_use_hc_ip_nocols.csv

inst/extdata/resource_use_hc_ip_noelcol.csv

inst/extdata/resource_use_hc_ip_nonumuse.csv

inst/extdata/resource_use_hc_ip_numuse_missing.csv

inst/extdata/resource_use_hc_ip_numuse_wrong.csv

inst/extdata/sureg_data.csv

inst/extdata/survival_aml.csv

inst/extdata/survival_lung.csv

inst/extdata/table_param.csv

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inst/extdata/table_param_nostrategycol.csv

inst/extdata/test.xlsx

inst/extdata/trial_data.csv

inst/extdata/trial_data_sampleEq5d.csv

inst/extdata/trial_data_sampleEq5d3l.csv

inst/extdata/trial_data_sample_error.csv

inst/extdata/trial_data_sample_notenoughcol.csv

inst/extdata/value_na.csv

man/adl_scoring.Rd man/assign_parameters.Rd man/blank.Rd man/calculate_icer_nmb.Rd man/check_estimate_required_params.Rd man/check_estimate_substitute_proper_params.Rd man/check_link_glm.Rd man/check_list_markov_models.Rd man/check_null_na.Rd man/check_trans_prob.Rd man/check_treatment_arm.Rd man/check_values_states.Rd man/checks_markov_pick_method.Rd man/checks_plot_dsa.Rd man/combine_markov.Rd man/combine_state.Rd man/convert_freq_diff_basis.Rd man/convert_to_given_timeperiod.Rd man/convert_volume_basis.Rd man/convert_weight_diff_basis.Rd man/convert_wtpertimediff_basis.Rd man/cost_data.Rd man/costing_AandE_admission.Rd man/costing_inpatient_daycase_admission.Rd man/costing_resource_use.Rd man/create_new_dataset.Rd man/define_parameters.Rd man/define_parameters_psa.Rd man/define_parameters_sens_anal.Rd man/define_transition_table.Rd man/do_diagnostic_glm.Rd man/do_diagnostic_linear_regression.Rd man/do_psa.Rd man/do_sensitivity_analysis.Rd man/encode_codes_data.Rd man/eval_assign_trans_prob.Rd man/eval_assign_values_states.Rd man/find_glm_distribution.Rd man/find_keyword_rand_generation.Rd man/find_keyword_regression_method.Rd man/find_parameters_btn_operators.Rd man/find_required_parameter_combs.Rd man/find_survreg_distribution.Rd man/form_expression_glm.Rd man/form_expression_lm.Rd man/form_expression_mixed_model_lme4.Rd man/generate_wt_time_units.Rd man/generate_wt_vol_units.Rd man/get_age_details.Rd man/get_col_multiple_pattern.Rd man/get_colnames_codedvalues.Rd man/get_cost_AandE_code.Rd man/get_cost_AandE_description.Rd man/get_cost_ip_dc_description.Rd man/get_cost_ip_dc_hrg.Rd man/get_eq5d_details.Rd man/get_extension_file.Rd man/get_gender_details.Rd man/get_mean_sd_age.Rd man/get_mortality_from_file.Rd man/get_name_value_probdistrb_def.Rd man/get_outcome_details.Rd man/get_parameter_def_distribution.Rd man/get_parameter_direct.Rd man/get_parameter_estimated_regression.Rd man/get_parameter_read.Rd man/get_slope_intercept.Rd man/get_slope_intercept_cross.Rd man/get_slope_intercept_nested.Rd man/get_timepoint_details.Rd man/get_trial_arm_details.Rd man/get_var_state.Rd man/health_state.Rd man/init_trace.Rd man/keep_results_plot_dsa.Rd man/list_paramwise_psa_result.Rd man/load_trial_data.Rd man/make_string_covariates.Rd man/map_eq5d5Lto3L_VanHout.Rd man/markov_model.Rd man/microcosting_liquids_long.Rd man/microcosting_liquids_wide.Rd man/microcosting_patches_long.Rd man/microcosting_patches_wide.Rd man/microcosting_tablets_long.Rd man/microcosting_tablets_wide.Rd man/plot_ceac.Rd man/plot_dsa.Rd man/plot_dsa_difference.Rd man/plot_dsa_icer_range.Rd man/plot_dsa_nmb_range.Rd man/plot_dsa_others_range.Rd man/plot_efficiency_frontier.Rd man/plot_model.Rd man/plot_prediction_parametric_survival.Rd man/plot_return_residual_cox.Rd man/plot_return_residual_survival.Rd man/plot_return_survival_curve.Rd man/plot_survival_cox_covariates.Rd man/populate_transition_matrix.Rd man/predict_coxph.Rd man/prediction_regression.Rd man/report_sensitivity_analysis.Rd man/return0_if_not_null_na.Rd man/return_equal_liststring_col.Rd man/return_equal_liststring_listcol.Rd man/return_equal_str_col.Rd man/set_var_state.Rd man/strategy.Rd man/summary_plot_psa.Rd man/table_param.Rd man/trace_data.Rd man/transition_cost_util.Rd man/trial_data.Rd man/use_coxph_survival.Rd man/use_fh2_survival.Rd man/use_fh_survival.Rd man/use_generalised_linear_mixed_model.Rd man/use_generalised_linear_model.Rd man/use_km_survival.Rd man/use_linear_mixed_model.Rd man/use_linear_regression.Rd man/use_parametric_survival.Rd man/use_seemingly_unrelated_regression.Rd man/use_survival_analysis.Rd man/utility_data.Rd man/value_ADL_scores_IPD.Rd man/value_Shows_IPD.Rd man/value_eq5d3L_IPD.Rd man/value_eq5d5L_IPD.Rd man/word2num.Rd

packDAMipd.Rproj

refs/10.1007s40273-015-0309-4_OA.pdf refs/2020.05.26.20113845v1.full.pdf refs/40273_2015_Article_309.pdf refs/Alarid-Escudero.pdf refs/Chancellor 1997.pdf refs/Enns.pdf refs/Krijkamp.pdf refs/Krijkamp/Appendix_A_online_supp.R refs/Krijkamp/Appendix_B_online_supp.R refs/Krijkamp/Appendix_C_online_supp.R refs/Krijkamp/Appendix_D_online_supp.R refs/Markov modles in med dec making.pdf refs/Markov_Models_for_Health_Economic_Evaluation_The_R.pdf refs/MedDecisMaking-2013-Naimark-961-70.pdf refs/ccor_cea7_gidwani_2016-03-02.pdf refs/half cycle correction.pdf vignettes/Cost-effectiveness acceptability curve.pdf vignettes/Deterministic sensitivity analysis (diff).pdf vignettes/Deterministic sensitivity analysis ICER.pdf vignettes/Deterministic sensitivity analysis.pdf vignettes/Deterministic_sensitivity_analysis.R vignettes/Deterministic_sensitivity_analysis.Rmd

vignettes/Deterministic_sensitivity_analysis.html

vignettes/Histogram of Cost.pdf vignettes/Histogram of ICER.pdf vignettes/Histogram of NMB.pdf vignettes/Histogram of Utility.pdf vignettes/Model_states.pdf vignettes/Probabilistic sensitivity analysis_ICER_NMB.pdf vignettes/Probabilstic_sensitivity_analysis.R vignettes/Probabilstic_sensitivity_analysis.Rmd

vignettes/Probabilstic_sensitivity_analysis.html

vignettes/Sick_sicker_age_dependent.R vignettes/Sick_sicker_age_dependent.Rmd

vignettes/Sick_sicker_age_dependent.html

vignettes/Simple_sick_sicker.R vignettes/Simple_sick_sicker.Rmd

vignettes/Simple_sick_sicker.html

vignettes/Utility or Effect.pdf vignettes/cycle_dependent.R vignettes/cycle_dependent.Rmd

vignettes/cycle_dependent.html

vignettes/ref.bib

sheejamk/DecisionAnalysisModel documentation built on March 10, 2021, 7:21 p.m.

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sheejamk/DecisionAnalysisModel
Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data

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Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data

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sheejamk/DecisionAnalysisModel Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data

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sheejamk/DecisionAnalysisModel
Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data

Files in sheejamk/DecisionAnalysisModel
Decision Analysis Modelling Package with Parameters Estimation Ability from Individual Patient Level Data