API for shinichinamba/jobwatcher
Build pipelines on SGE/HGC super-computer

Global functions
.as_character Source code
.map_as_character Source code
arrayjob_option Source code
as_bash_array Source code
binbash Source code
build_pipeline Source code
bulletize Source code
character_1_0 Source code
check_commands_exist Source code
convert_to_array Source code
directory_option Source code
done Source code
done_bullet Source code
dots_parser Source code
fail Source code
fail_bullet Source code
get_group_id Source code
get_group_name Source code
get_jobwatcher_mode Source code
get_user_id Source code
get_user_name Source code
ggsave_pipeline Source code
grov_env Source code
is_bash_name Source code
is_command_exist_hash Source code
is_command_exist_which Source code
is_number Source code
jobwatch Source code
list2null Source code
make_option Source code
make_qsubfile Source code
make_qsubfile_wrapper_uge Source code
mem Source code
p_load_chr Source code
p_load_github_chr Source code
p_ruler Source code
parallel_option Source code
parse_id Source code
pipeline_preset Source code
qacct Source code
qacct_txt Source code
qrecall Source code
qreport Source code
qreport_tbl Source code
qreport_xml Source code
qreport_xml_txt Source code
qstat Source code
qstat_xml_txt Source code
qsub Source code
qsub_function Source code
qsub_verbose Source code
read_shebang Source code
resource Source code
save_and_qsub Source code
send_command Source code
seq_int_chr Source code
todo Source code
todo_bullet Source code
try_system Source code
try_xml_to_tbl Source code
try_xml_to_tbl_internal Source code
txt_to_tbl Source code
vacant_tbl Source code
verify_file_exists Source code
verify_hgc Source code
verify_in Source code
verify_no_na Source code
verify_path Source code
verify_scalar Source code
verify_uge Source code
warn_if_first_time_qsub Source code
watch Source code
watch_hgc Source code
watch_uge Source code
write_and_qrecall Source code
write_and_qsub Source code
write_job Source code
write_qsubfile Source code
shinichinamba/jobwatcher documentation built on Jan. 28, 2021, 9:40 a.m.