Files in shuangsong0110/LDER
Leveraging LD eigenvalue regression to improve the estimation of SNP heritability and confounding inflation
DESCRIPTION
LDER.Rproj
LDER_0.1.0.tar.gz
LICENSE
NAMESPACE
R/agtc.R
R/bedNA.R
R/cvt.h2.R
R/generateLD.R
R/get.res.R
R/get.stats.R
R/lder.R
R/ldscore.R
R/runLDER.R
README.md
data/afr.rda
data/asn.rda
data/eur.rda
man/generateLD.Rd
man/runLDER.Rd
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.05_alpha_0.005_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.05_alpha_0.005_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.05_alpha_0.01_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.05_alpha_0.01_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.05_alpha_0.05_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.05_alpha_0.05_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.05_alpha_0.1_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.05_alpha_0.1_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.1_alpha_0.005_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.1_alpha_0.005_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.1_alpha_0.01_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.1_alpha_0.01_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.1_alpha_0.05_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.1_alpha_0.05_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.1_alpha_0.1_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.1_alpha_0.1_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.2_alpha_0.005_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.2_alpha_0.005_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.2_alpha_0.01_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.2_alpha_0.01_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.2_alpha_0.05_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.2_alpha_0.05_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.2_alpha_0.1_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.2_alpha_0.1_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.005_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.005_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.01_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.01_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.05_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.05_m_1e+05_inf_1.1.plot_dat50.noweight.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.05_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.05_m_1e+05_inf_1.plot_dat50.noweight.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.1_m_1e+05_inf_1.1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/plot_dat/h2_0.5_alpha_0.1_m_1e+05_inf_1.plot_dat50.new_2stage_inf1stage.all.new.RData
paper_code/1_simu_simulation_summstats/simu_fixR.R
paper_code/1_simu_simulation_summstats/simu_fixR_1stage.R
paper_code/1_simu_simulation_summstats/simu_fixR_noweight.R
paper_code/2_simulation_real_genotype/20210714_code.R
paper_code/2_simulation_real_genotype/simu2_code.R
paper_code/2_simulation_real_genotype/simu2_code_1stage.R
paper_code/3_real_data_10traits/20210714_code.R
paper_code/3_real_data_10traits/20210714_lder_code_ukb_trait.R
paper_code/3_real_data_10traits/hdl_10traits.R
paper_code/3_real_data_10traits/hess_10traits.R
paper_code/3_real_data_10traits/plot_10traits.R
paper_code/4_real_data_ukbb/20210714_code.R
paper_code/4_real_data_ukbb/code_ukbb_traits.R
paper_code/4_real_data_ukbb/plot.R
