Man pages for shug0131/cctu
In-House Functions for Report Writing at Cambridge Clinical Trials Unit
| all_is_numeric | Check if All Elements in Character Vector are Numeric |
| apply_macro_dict | Apply DLU/CLU file to the data frame |
| attach_pop | Functions that attach and detach environments based on which... |
| cctab_plot | Create summary plot for cctab function |
| cctu_initialise | initialise objects for using cctu package |
| cctu-package | cctu: A package for producing analysis reports from clinical... |
| clean_names | Tidies up names of a data frame within certain rules |
| clean_up | removes all the objects in the environment, apart from those... |
| copy_lab | Copy variable label and value labels |
| create_popn_envir | create environments contain a set of data frames filtered for... |
| create_word_xml | Produces the final xml file |
| cttab | Generate an table of descriptive statistics. |
| data_table_summary | Provides a summary with date stamps of external data files. |
| detect_invalid_utf8 | Functions to detect and delete non-UTF8 characters, which the... |
| dump_missing_report | Save/Get/Reset missingness report |
| extract_form | Extract data by form from MACRO dataset |
| format_percent | Format number to percent |
| format_pval | Format p-value |
| geom_stepribbon | Step ribbon plots. |
| get_code_tree | track which files of code are called by which oher files |
| get_meta_table | Functions to handle meta_table |
| get_obj | Gets copies of objects from parent environments, or returns... |
| is_empty | Check whether string, list or vector is empty |
| km_ggplot | Create a Kaplan-Meier plot using ggplot2 |
| lab2val | Replace vector/matrix/data.frame values with corresponding... |
| merge_data | Merge vertically split data |
| meta_table_example | Example of a meta_table data frame |
| num_stat | Compute some basic descriptive statistics. |
| order_dewey | sorts inputs that look like Dewey decimal numbering |
| p_format | formats p values with rounding and <0.001 |
| plot.code_tree | Print/plot the code tree. |
| plot.km_ggplot | plot methods for km_ggplot object |
| print.code_tree | Print methods for code_tree object |
| print.cttab | |
| print.km_ggplot | print methods for km_ggplot object |
| propercase | Function to convert text to proper case |
| rbind.cttab | Combine descriptive statistics table by rows |
| rbind_space | Function to bind tables/matrices with a blank row between... |
| read_data | Automatic reading in data from a meta-table of external data... |
| regression_table | Produce a table summarising a regression model for a study... |
| remove_blank_rows_cols | Function to remove blank rows/columns from a df |
| render_cat | Render categorical values for table output. |
| render_numeric | Render continuous values for table output. |
| report_missing | Generate missing report |
| rm_envir | A function to remove all attached objects from the search... |
| run_batch | Runs a script in batch mode directly from within R. |
| set_dlu | Set/get DLU data |
| signif_pad | Round numbers with 0-padding. |
| source | A modified version of the source() function to capture in a... |
| stat_tab | Generate a descriptive summary statistics table. |
| sumby | Produces summary statistics on a variable broken down by arm,... |
| sumfig | Produce ggplot to represent summary statistics graphically,... |
| tidy_dlu | Tidy DLU form |
| to_factor | Convert vector but keep value/value labels. |
| unlab | Drop variable label and value labels |
| val_lab | Set or get value labels |
| var_lab | Set or get variable label |
| write_docx | Produces the final Docx file |
| write_ggplot | Function to save ggplot figures. |
| write_manual | Function to write to meta-table and clean up without creating... |
| write_plot | Function to save plot figures |
| write_table | Function to write a table into xml format in the correct... |
| write_text | Function to write a text into xml format in the correct... |
