| AddHoleToPolygon | Add holes into Polygons 'AddHoleToPolygon' |
| autoPIHMgis | Automatically run PIHMgis based on the input data and... |
| BasicPlot | Read multiply PIHM output files and do time-series plot |
| BC | Generate the default Boundary Condition 'BC' |
| CMAES | Automatically calibrate model, that requires user-defined... |
| CommonPoints | Find the common coordinates in two groups of coordinates. |
| compareMaps | Plot multiple maps 'compareMaps' |
| correctRiverSlope | Convert the bed slope of river, to avoid negative/zero slope... |
| count | Count the frequency of numbers 'count' |
| datafilter.riv | Filter the river data with a filter 'datafilter.riv' |
| DeltaS | Calculate the Change of Storage. 'DeltaS' |
| dot-pihm | This is .pihm environment. |
| Eudist | Eudilic Distance 'Eudist' |
| EXEC | Execute the program in terminal. 'EXEC' |
| extractCoords | extract Coordinates of SpatialLines or SpatialPolygons... |
| extractRaster | Extract values on Raster map. The line is a straight line... |
| fdc | Default Comparison of the observation and simulation 'fdc' |
| filebackup | Write a backup file if the file exist 'filebackup' |
| fishnet | Generatue fishnet 'fishnet' |
| FromToNode | return the FROM and TO nodes index of the SpatialLines... |
| fun.lairl | Generate the default landcover parameters for NLCD... |
| getAquiferDepth | Calculate the AquiferDepth of mesh cells 'getAquiferDepth' |
| getArea | Calculate the area of the cells 'getArea' |
| getCentroid | Get the centroids of the cells 'getCentroid' |
| getCriticalRiver | Get Index of critical river channels, that is defined as... |
| getElevation | Calculate the elevation of mesh cells 'getElevation' |
| getOutlets | Get outlet ID(s) 'getOutlets' |
| getRiverNodes | Get the From/To nodes of the river. 'getRiverNodes' |
| getVertex | Calculate the Vertex of the cells 'getVertex' |
| GreenAmpt | Calculate infiltration with Green Ampt method 'GreenAmpt' |
| highlight_id | Highlight elements with id. 'highlight_id' |
| hydrograph | Plot hydrograph 'hydrograph' |
| lc.default | The default land cover parameters from University of... |
| lc_EQ | convert equation from Univeristy of Marryland classes to NLCD... |
| LineFit | Linefit the observation and simulation 'LineFit' |
| map2d | Raster plot the mesh data 'map2d' |
| m.DomainDecomposition | Generate triangle mesh domain 'm.DomainDecomposition' |
| MeltFactor | Generate the default melt factor 'MeltFactor' |
| MeshAtt | Summary of the attributions on Mesh 'MeshAtt' |
| MeshData2Raster | SpatialData to Raster 'MeshData2Raster' |
| meshSinks | Get the Sink cells in pihm mesh 'meshSinks' |
| ModelInfo | Summary of the basic information of PIHM input data.... |
| NLCD.colors | Return NLCD colors. 'NLCD.colors' |
| NLCD.names | Return NLCD class names. 'NLCD.names' |
| NodeIDList | return the Index of nodes in SpatialData 'NodeIDList' |
| PIHM | Setup .pihm environment. 'read.tsd' |
| pihmAtt | extract Coordinates of SpatialLines or SpatialPolygons... |
| pihmcalib | Generate the default PIHM model calibration 'pihmcalib' |
| PIHM.filein | Prepare Input file of PIHM 'PIHM.filein' |
| PIHMgisR-package | A short title line describing what the package does |
| pihm.init | extract Coordinates of SpatialLines or SpatialPolygons... |
| PIHM.mask | Generate the raster mask of Mesh domain 'PIHM.mask' |
| pihmMesh | Generate the PIHM mesh data from the triangulation 'pihmMesh' |
| PIHM-mesh-class | Class of PIHM.mesh 'PIHM.mesh' |
| pihmpara | Generate the default PIHM model configuration 'pihm.para' |
| pihmRiver | calculate river order, downstream, slope and length... |
| PIHM-River-class | Class of PIHM.river 'PIHM.river' |
| pihmRiverSeg | Generate the river segments table 'pihmRiverSeg' |
| plot_animate | Plot animation maps 'plot.animate' |
| plot_sp | Plot SpatialPolygons maps 'plot.sp' |
| plot_tsd | Plot xts data.. 'plot_tsd' |
| png.control | Prepare png figure out. 'png.control' |
| PointInDistance | Simplify SpatialData. 'PointInDistance' |
| polygonArea | Calculate the Polygon Area; |
| Pop2Calib | Apply population to calibration values. 'Pop2Calib' |
| pre.files | Generate file path for calibration populations. 'pre.files' |
| ProjectCoordinate | Re-project coordinates betwen GCS and PCS 'ProjectCoordinate' |
| PTF | Pedotransfer function to generate soil/geol parameter from... |
| PTF.geol | Pedotransfer function to generate soil parameter 'PTF.geol' |
| PTF.lc | Generate the default land cover parameters of NLCD classes.... |
| PTF.soil | Pedotransfer function to generate soil parameter 'PTF.soil' |
| QvsO | Default Comparison of the observation and simulation 'QvsO' |
| readatt | Read the .att file 'readmesh' |
| readcalib | Read the .calib file 'readcalib' |
| readchannel | Read the .rivchn file 'readchannel' |
| readconfig | Read the configuration (.para, .calib) file 'readconfig' |
| read.df | Read the matrix or data.frame file which has (nrow, ncol) in... |
| readforc.csv | Read the .csv files in .forc file 'readlc' |
| readforc.fn | Read the .forc file 'readlc' |
| readgeol | Read the .geol file 'readgeol' |
| readic | Read the .ic file 'readic' |
| readlai | Read the .lai Time-Series file 'readlai' |
| readlc | Read the .lc file 'readlc' |
| readmesh | Read the .mesh file 'readmesh' |
| readout | Read output file from PIHM |
| readpara | Read the .para file 'readpara' |
| readriv | Read the .riv file 'readriv' |
| readriv.sp | Read the river shapefile 'readriv.sp' |
| readsoil | Read the .soil file 'readsoil' |
| read.tsd | Read the time-series file, which has c(nrow, ncol,... |
| removeholes | Remove the holes in polygons 'removeholes' |
| RiverLength | Calculate the river length 'RiverLength' |
| RiverSlope | Calculate the river slope 'RiverSlope' |
| RiverType | parameters for river types 'RiverType' |
| rowMatch | Identify whether every row of x is same as m; |
| sac | This is data of one of sub-catchmetn in Sacramento Watershed... |
| sh | This is data to be included in my package |
| SimpleSpatial | Simplify SpatialData. |
| SimplifybyLen | Simplify Polylines by length 'SimplifybyLen' |
| sp2PSLG | Convert SpatialLines or SpatialPolygons a Planar Straight... |
| sp2raster | SpatialData to Raster 'sp2raster' |
| sp.CutSptialLines | Cut sptialLines with threshold. 'sp.CutSptialLines' |
| sp.mesh2Shape | Generate triangle mesh domain 'sp.mesh2Shape' |
| sp.riv2shp | Convert the PIHM.river class to SpatialLines 'sp.riv2shp' |
| sp.RiverDown | determine index of downstream 'sp.RiverOrder' |
| sp.RiverOrder | calculate river order 'sp.RiverOrder' |
| sp.RiverPath | determine River path, disolve the river network based on... |
| sp.RiverSeg | Cut the river by PIHM.mesh 'sp.RiverSeg' |
| sp.simplifyLen | Simplify Polylines by length 'sp.simplifyLen' |
| sp.Tri2Shape | Generate triangle mesh domain 'sp.Tri2Shape' |
| sunapee | This is data of Lake Sunappe to be included in my package |
| toCentroid | Find the centroid of the triangles 'toCentroid' |
| Tri2Centroid | Centroids of the triangulation 'Tri2Centroid' |
| triTopology | Determine the topological relation among triangles. |
| ts2df | Convert Time-Series data to data.frame 'ts2df' |
| ts2map | Plot map of time-series data 'ts2map' |
| wb.all | Calculate the water balance 'wb.all' |
| wb.DS | Calculate the Change of Storage. 'wb.DS' |
| wb.ele | Calculate the water balance 'wb.ele' |
| wb.riv | Calculate the water balance 'wb.riv' |
| which_outliers | Find the outliers in a dataset 'which_outliers' |
| write.cmaes | write the configuration for CMA-ES method 'write.cmaes' |
| write.config | Write PIHM configuration files (.para, .calib, etc.) |
| write.df | Write data.frame out into file 'write.df' |
| writeforc | Write PIHM .forc file 'writeforc' |
| writeinit | Write PIHM .ic file 'writeinit' |
| writemesh | Write PIHM .mesh file 'writemesh' |
| writeriv | Write PIHM .mesh file 'writemesh' |
| writeshape | Write ESRI shapefile out 'writeshape' |
| write.tsd | Write xts data out into file 'write.tsd' |
| write.xts | Write xts data out into file 'write.xts' |
| xy2ID | Convert the 'xy' (X,Y) into Index in 'coords' 'xy2ID' |
