simeross/CuPhyR: Custom Functions for Microbiome Analysis with Phyloseq

This package contains functions that offer customized shortcuts for interacting with phyloseq class objects generated with the Phyloseq package by Paul J. McMurdie (github.com/joey711/phyloseq). Since it is tested and developed with ASV data from the dada2 package by Bejamin Callahan (benjjneb/dada2), the function names are referring to ASVs instead of 'taxa' (phyloseq terminology). Use at your own risk, feedback welcome!

install.packages("remotes")
remotes::install_github("simeross/CuPhyR")