API for simondrue/castle
Fortify your ddPCR analyses for low-frequency variant detection
| Global functions | |
|---|---|
| %>% | Man page |
| P_M_only | Source code |
| P_WT_only | Source code |
| P_d_neg | Source code |
| P_d_pos | Source code |
| check_background_samples | Source code |
| check_input_samples | Source code |
| da_P_M_only | Source code |
| da_P_WT_only | Source code |
| da_P_d_neg | Source code |
| da_P_d_pos | Source code |
| da_full_log_lik | Source code |
| db_P_M_only | Source code |
| db_P_WT_only | Source code |
| db_P_d_neg | Source code |
| db_P_d_pos | Source code |
| db_full_log_lik | Source code |
| dc_P_M_only | Source code |
| dc_P_WT_only | Source code |
| dc_P_d_neg | Source code |
| dc_P_d_pos | Source code |
| dc_full_log_lik | Source code |
| dl_P_M_only | Source code |
| dl_P_WT_only | Source code |
| dl_P_d_neg | Source code |
| dl_P_d_pos | Source code |
| dr_P_M_only | Source code |
| dr_P_WT_only | Source code |
| dr_P_d_neg | Source code |
| dr_P_d_pos | Source code |
| dr_full_log_lik | Source code |
| estimate_l | Source code |
| estimate_r | Source code |
| estimate_r_integrated | Source code |
| find_abd_confidence_intervals | Source code |
| full_log_lik | Source code |
| full_log_lik_test | Source code |
| full_log_lik_train | Source code |
| get_abc_grid_log_lik | Source code |
| get_l_CI | Source code |
| get_r_CI_integrated | Source code |
| get_r_CI_simple | Source code |
| get_start_values_abc | Source code |
| grad_full_log_lik_test | Source code |
| grad_full_log_lik_train | Source code |
| import_QS_files | Man page Source code |
| integrated_log_lik | Source code |
| integrated_log_lik_test | Source code |
| ll_ratio | Source code |
| simulate_droplet_counts | Man page Source code |
| simulate_molecule_counts | Man page Source code |
| sum_log_p | Source code |
| test_r_equal_0_integrated | Source code |
| test_r_equal_0_simple | Source code |
| test_tumor_sample_integrated | Man page Source code |
| test_tumor_sample_simple | Man page Source code |
| train_integrated_ddpcr_model | Man page Source code |
| train_simple_ddpcr_model | Man page Source code |
