Man pages for sitkensis22/localSCR
Supporting functions for advanced Bayesian spatial capture-recapture modeling using 'nimble'
| customize_model | Efficiently edit rows of model code generated from nimble |
| discretize_classic | Discretize traps and initial activity centers |
| get_classic | Retrieve nimbleCode for spatial capture-recapture models |
| get_discrete | Retrieve nimbleCode for discrete spatial capture-recapture... |
| get_unmarked | Retrieve nimbleCode for spatial count models |
| grid_classic | Define state-space for spatial capture-recapture models |
| initialize_classic | Generate starting locations for activity centers |
| localize_classic | Prepare classic SCR data components for local modeling... |
| mask_polygon | Create habitat mask matrix or array from polygon |
| mask_raster | Create habitat mask matrix or array from raster |
| nimSummary | Summarize MCMC chain output from nimble |
| print_model | Display row indices for model used in 'nimble' |
| realized_density | Generate realized density surface from MCMC output |
| rescale_classic | Rescale trap coordinates, grid extent, and starting activity... |
| rescale_local | Rescale trap coordinates, individual-level grid extent, and... |
| run_classic | Run spatial capture-recapture models in nimble using parallel... |
| run_discrete | Run discrete spatial capture-recapture models in 'nimble'... |
| sim_classic | Simulate basic spatial capture-recapture data |
