Man pages for sjevelazco/flexsdm
Tools for Data Preparation, Fitting, Prediction, Evaluation, and Post-Processing of Species Distribution Models

abiesA data set containing localities and environmental condition...
backgA data set containing environmental conditions of background...
calib_areaDelimit calibration area for constructing species...
correct_colinvarCollinearity reduction of predictor variables
data_bpdpCalculate data to construct partial dependence surface plots
data_pdpCalculate data to construct partial dependence plots
env_outliersIntegration of outliers detection methods in environmental...
esm_gamFit and validate Generalized Additive Models based on...
esm_gauFit and validate Gaussian Process models based on Ensembles...
esm_gbmFit and validate Generalized Boosted Regression models based...
esm_glmFit and validate Generalized Linear Models based on Ensembles...
esm_maxFit and validate Maximum Entropy Models based on Ensemble of...
esm_netFit and validate Neural Networks based on Ensembles of Small...
esm_svmFit and validate Support Vector Machine models based on...
extra_evalMeasure model extrapolation based on Shape extrapolation...
extra_truncateTruncate suitability predictions based on an extrapolation...
fit_ensembleEnsemble model fitting and validation
fit_gamFit and validate Generalized Additive Models
fit_gauFit and validate Gaussian Process models
fit_gbmFit and validate Generalized Boosted Regression models
fit_glmFit and validate Generalized Linear Models
fit_maxFit and validate Maximum Entropy models
fit_netFit and validate Neural Networks models
fit_rafFit and validate Random Forests models
fit_svmFit and validate Support Vector Machine models
get_blockTransform a spatial partition layer to the same spatial...
hesperoA data set containing localities of Hesperocyparis...
homogenize_naHomogenize cells with NAs across all layers
interpRaster interpolation between two time periods
msdm_posterioriMethods to correct overprediction of species distribution...
msdm_prioriCreate spatial predictor variables to reduce overprediction...
occfilt_envPerform environmental filtering on species occurrences
occfilt_geoPerform geographical filtering on species occurrences
occfilt_selectSelect filtered occurrences
part_randomConventional data partitioning methods
part_sbandSpatial band cross-validation
part_sblockSpatial block cross-validation
part_senvEnvironmental and spatial cross-validation
p_bpdpBivariate partial dependence plot
p_extraGraphical exploration of extrapolation or suitability pattern...
plot_resPlot different resolutions to be used in part_sblock
p_pdpPartial Dependent Plot
sample_backgroundSample background points
sample_pseudoabsSample pseudo-absences
sdm_directoryCreate directories for saving the outputs of the flexsdm
sdm_evalCalculate different model performance metrics
sdm_extractExtract environmental data values from a spatial raster based...
sdm_predictSpatial predictions from individual and ensemble models
sdm_summarizeMerge model performance tables
sdm_varimpCalculate permutation-based variable importance scores for...
sppA data set containing presences and absences of three virtual...
tune_gbmFit and validate Generalized Boosted Regression models with...
tune_maxFit and validate Maximum Entropy models with exploration of...
tune_netFit and validate Neural Networks models with exploration of...
tune_rafFit and validate Random Forest models with exploration of...
tune_svmFit and validate Support Vector Machine models with...
sjevelazco/flexsdm documentation built on Feb. 28, 2025, 9:07 a.m.