sknqualitasag/qp4ewc
Process Input and Results of ECOWEIGHT

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sknqualitasag/qp4ewc: Process Input and Results of ECOWEIGHT
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Process Input and Results of ECOWEIGHT

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/calving.R R/change_input_parameter.R R/conformation_fat_flp.R R/constants.R R/hello.R R/input.R R/logger.R R/post_processing.R R/pre_processing.R R/prepare_scenario.R R/progeny_data_flp.R R/results.R R/updating.R README.Rmd README.md
inst/.DS_Store
inst/bash/run_qp4ewc.ip
inst/bash/run_qp4ewc_script.sh
inst/extdata/ewbc/Ecoweight_output/AN_KR_3_Natura-Beef_test/test
inst/extdata/ewbc/Ecoweight_output/AU_AU_1_Natura-Beef_test/test
inst/extdata/ewbc/Ecoweight_output/CH_KR_3_Natura-Beef_test/test
inst/extdata/ewbc/Ecoweight_output/LM_LM_1_Natura-Beef_test/test
inst/extdata/ewbc/Ecoweight_output/OB_KR_3_Natura-Beef_test/test
inst/extdata/ewbc/Ecoweight_output/SI_SI_1_Natura-Beef_test/test
inst/extdata/ewbc/bull_price.txt
inst/extdata/ewbc/cow_price.txt
inst/extdata/ewbc/heifer_price.txt
inst/extdata/ewbc/input35_statement.txt
inst/extdata/ewbc/input36_statement.txt
inst/extdata/ewbc/input_calving_statement.txt
inst/extdata/ewbc/input_flp_carcass_matrix_statement.txt
inst/extdata/ewbc/input_flp_statement.txt
inst/extdata/ewbc/input_geneticSD.txt
inst/extdata/ewbc/input_literature.txt
inst/extdata/ewbc/input_par_statement.txt
inst/extdata/ewbc/input_purchasedreplacementheifers.txt
inst/extdata/ewbc/input_testedbulls.txt
inst/extdata/ewbc/output_searchpattern.txt
inst/extdata/ewbc/output_statement.txt
inst/extdata/ewbc/test/Ecoweight_output/AN_KR_3_Natura-Beef/mean_sd_calvingscore.csv
inst/extdata/ewbc/test/Ecoweight_output/AU_AU_1_Natura-Beef/mean_sd_calvingscore.csv
inst/extdata/ewbc/test/Ecoweight_output/CH_KR_3_Natura-Beef/mean_sd_calvingscore.csv
inst/extdata/ewbc/test/Ecoweight_output/LM_LM_1_Natura-Beef/mean_sd_calvingscore.csv
inst/extdata/ewbc/test/Ecoweight_output/OB_KR_3_Natura-Beef/mean_sd_calvingscore.csv
inst/extdata/ewbc/test/Ecoweight_output/SI_SI_1_Natura-Beef/mean_sd_calvingscore.csv
inst/extdata/ewbc/test/test_mat_coeffprice_cow.csv
inst/extdata/ewbc/test/test_mat_freqmat_cow.csv
inst/extdata/ewbc/test/test_pedigree.txt
inst/extdata/ewbc/test/test_tbl_calving.csv
inst/extdata/ewbc/test/test_tbl_flp.csv
inst/extdata/ewbc/test/test_zws_muku_flp.csv
inst/extdata/ewbc/test/test_zws_muku_gal.csv
inst/extdata/ewdc/Ecoweight_output/AN_BS_4_ConventionalBeef_test/test
inst/extdata/ewdc/Ecoweight_output/AN_BS_4_ConventionalBeef_test_glPlus1/test
inst/extdata/ewdc/Ecoweight_output/AN_BS_4_Export_test/test
inst/extdata/ewdc/Ecoweight_output/AN_BS_4_Export_test_glPlus1/test
inst/extdata/ewdc/Ecoweight_output/AN_HO_4_ConventionalBeef_test/test
inst/extdata/ewdc/Ecoweight_output/AN_HO_4_ConventionalBeef_test_glPlus1/test
inst/extdata/ewdc/Ecoweight_output/AN_HO_4_ConventionalVeal_test/test
inst/extdata/ewdc/Ecoweight_output/AN_HO_4_ConventionalVeal_test_glPlus1/test
inst/extdata/ewdc/Ecoweight_output/AN_HO_4_Export_test/test
inst/extdata/ewdc/Ecoweight_output/AN_HO_4_Export_test_glPlus1/test
inst/extdata/ewdc/Ecoweight_output/LM_BS_4_ConventionalBeef_test/test
inst/extdata/ewdc/Ecoweight_output/LM_BS_4_ConventionalBeef_test_glPlus1/test
inst/extdata/ewdc/Ecoweight_output/LM_BS_4_Export_test/test
inst/extdata/ewdc/Ecoweight_output/LM_BS_4_Export_test_glPlus1/test
inst/extdata/ewdc/Ecoweight_output/LM_HO_4_ConventionalBeef_test/test
inst/extdata/ewdc/Ecoweight_output/LM_HO_4_ConventionalBeef_test_glPlus1/test
inst/extdata/ewdc/Ecoweight_output/LM_HO_4_ConventionalVeal_test/test
inst/extdata/ewdc/Ecoweight_output/LM_HO_4_ConventionalVeal_test_glPlus1/test
inst/extdata/ewdc/Ecoweight_output/LM_HO_4_Export_test/test
inst/extdata/ewdc/Ecoweight_output/LM_HO_4_Export_test_glPlus1/test
inst/extdata/ewdc/bull_price.txt
inst/extdata/ewdc/cow_price.txt
inst/extdata/ewdc/heifer_price.txt
inst/extdata/ewdc/input_calving_statement.txt
inst/extdata/ewdc/input_flp_carcass_matrix_statement.txt
inst/extdata/ewdc/input_flp_statement.txt
inst/extdata/ewdc/input_geneticSD.txt
inst/extdata/ewdc/input_literature_BS_ConventionalBeef.txt
inst/extdata/ewdc/input_literature_BS_ConventionalVeal.txt
inst/extdata/ewdc/input_literature_BS_Export.txt
inst/extdata/ewdc/input_literature_HO_ConventionalBeef.txt
inst/extdata/ewdc/input_literature_HO_ConventionalVeal.txt
inst/extdata/ewdc/input_literature_HO_Export.txt
inst/extdata/ewdc/input_literature_OB_ConventionalBeef.txt
inst/extdata/ewdc/input_literature_OB_ConventionalVeal.txt
inst/extdata/ewdc/input_literature_SI_ConventionalBeef.txt
inst/extdata/ewdc/input_literature_SI_ConventionalVeal.txt
inst/extdata/ewdc/input_par_statement.txt
inst/extdata/ewdc/output_searchpattern.txt
inst/extdata/ewdc/output_statement.txt
inst/extdata/ewdc/test/Ecoweight_output/AN_BS_4_ConventionalBeef/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Ecoweight_output/AN_BS_4_Export/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Ecoweight_output/AN_HO_4_ConventionalBeef/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Ecoweight_output/AN_HO_4_ConventionalVeal/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Ecoweight_output/AN_HO_4_Export/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Ecoweight_output/LM_BS_4_ConventionalBeef/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Ecoweight_output/LM_BS_4_Export/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/CHECKD
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/CHECKDhelp
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT07.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT11.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT15.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT21.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT22.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT23.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT24.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT25.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT27.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT28.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT29.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT30.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT31.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT32.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT33.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT37.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT38.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/INPUT39.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/PARAD.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/TEXTD_OUT.TXT
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalBeef/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_ConventionalVeal/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Ecoweight_output/LM_HO_4_Export/mean_sd_calvingscore.csv
inst/extdata/ewdc/test/Preprocess_outputLM_HO_4_ConventionalBeefcarcass_prices.csv
inst/extdata/ewdc/test/test_calf_data.csv
inst/extdata/ewdc/test/test_pedigree.txt
inst/extdata/ewdc/test/test_zws_muku_flp.csv
inst/extdata/ewdc/test/test_zws_muku_gal.csv
inst/extdata/ewdc/veal_price.txt
inst/templates/ewbc/INPUT01.TXT
inst/templates/ewbc/INPUT02.TXT
inst/templates/ewbc/INPUT03.TXT
inst/templates/ewbc/INPUT04.TXT
inst/templates/ewbc/INPUT05.TXT
inst/templates/ewbc/INPUT06.TXT
inst/templates/ewbc/INPUT08.TXT
inst/templates/ewbc/INPUT09.TXT
inst/templates/ewbc/INPUT10.TXT
inst/templates/ewbc/INPUT13.TXT
inst/templates/ewbc/INPUT14.TXT
inst/templates/ewbc/INPUT16.TXT
inst/templates/ewbc/INPUT17.TXT
inst/templates/ewbc/INPUT18.TXT
inst/templates/ewbc/INPUT19.TXT
inst/templates/ewbc/INPUT20.TXT
inst/templates/ewbc/INPUT26.TXT
inst/templates/ewbc/INPUT34.TXT
inst/templates/ewbc/INPUT35.TXT
inst/templates/ewbc/INPUT36.TXT
inst/templates/ewbc/PARA.TXT
inst/templates/ewbc/TEXT_OUT.TXT
inst/templates/ewdc/CHECKD
inst/templates/ewdc/CHECKDhelp
inst/templates/ewdc/INPUT07.TXT
inst/templates/ewdc/INPUT11.TXT
inst/templates/ewdc/INPUT15.TXT
inst/templates/ewdc/INPUT21.TXT
inst/templates/ewdc/INPUT22.TXT
inst/templates/ewdc/INPUT23.TXT
inst/templates/ewdc/INPUT24.TXT
inst/templates/ewdc/INPUT25.TXT
inst/templates/ewdc/INPUT27.TXT
inst/templates/ewdc/INPUT28.TXT
inst/templates/ewdc/INPUT29.TXT
inst/templates/ewdc/INPUT30.TXT
inst/templates/ewdc/INPUT31.TXT
inst/templates/ewdc/INPUT32.TXT
inst/templates/ewdc/INPUT33.TXT
inst/templates/ewdc/INPUT37.TXT
inst/templates/ewdc/INPUT38.TXT
inst/templates/ewdc/INPUT39.TXT
inst/templates/ewdc/PARAD.TXT
inst/templates/ewdc/TEXTD_OUT.TXT
man/age_in_days.Rd man/build_freq_conf_fat.Rd man/calculate_abortion_rate.Rd man/calculate_age_calf_sale.Rd man/calculate_bull_liveweight.Rd man/calculate_calvesdied24h_proportion.Rd man/calculate_calvesdiedafter24h_proportion.Rd man/calculate_calvingscore_proportion.Rd man/calculate_carcass_price.Rd man/calculate_cow_liveweight.Rd man/calculate_dailygain.Rd man/calculate_dailygain_rearing.Rd man/calculate_extrapolated_weaningweight.Rd man/calculate_mean_birthweight.Rd man/calculate_mean_liveweight_slaughter.Rd man/calculate_mean_slaughterage.Rd man/calculate_mean_weaningage.Rd man/calculate_mean_weaningweight.Rd man/calculate_rearing_age_beef.Rd man/calculate_rearing_age_calf.Rd man/calculate_rearing_weight_beef.Rd man/calculate_rearing_weight_calf.Rd man/calculate_rearing_weight_veal.Rd man/calculate_stillbirth_rate.Rd man/change_input_paramfile.Rd man/combine_popmean.Rd man/create_directory_scenario.Rd man/create_table_results_ewbc.Rd man/create_table_results_ewdc.Rd man/extract_adgfattening_popmean_ewdc.Rd man/extract_avg_fattening_length.Rd man/extract_birth_weaning_weight_popmean.Rd man/extract_calv_flesh_fat_popmean.Rd man/extract_ewbc.Rd man/extract_ewdc.Rd man/extract_gestlength_ecovalue_ewdc.Rd man/extract_gestlength_popmean_ewdc.Rd man/extract_popmean_ewbc.Rd man/extract_popmean_ewdc.Rd man/extract_propmale_female_popmean_ewbc.Rd man/extract_rearingweight_popmean_ewdc.Rd man/extract_result.Rd man/extract_slaughterweight_popmean.Rd man/get_constants.Rd man/get_constants_calving_beefOnbeef.Rd man/get_constants_calving_beefOndairy.Rd man/get_constants_carcass_beefOnbeef.Rd man/get_constants_carcass_beefOndairy.Rd man/get_constants_ew_input_beefOndairy.Rd man/get_constants_ewbc_input_beefOnbeef.Rd man/get_constants_liveweight_deductions_beefOnbeef.Rd man/get_constants_liveweight_deductions_female_beefOndairy.Rd man/get_constants_liveweight_deductions_male_beefOndairy.Rd man/get_constants_liveweight_deductions_veal_beefOndairy.Rd man/get_constants_postprocess_beefOnbeef.Rd man/get_constants_postprocess_beefOndairy.Rd man/get_constants_progeny_beefOnbeef.Rd man/get_constants_progeny_beefOndairy.Rd man/get_constants_transform_fleshiness.Rd man/get_qp4ewc_logger.Rd man/get_result_value.Rd man/hello.Rd man/plot_piechart_ewbc.Rd man/plot_piechart_ewdc.Rd man/post_process_output.Rd man/pre_process_ew_input.Rd man/pre_process_ew_input_calving.Rd man/pre_process_ewbc_input_carcass_data_flp.Rd man/pre_process_ewbc_input_progeny_data_flp.Rd man/pre_process_ewdc_input_carcass_data_flp.Rd man/pre_process_ewdc_input_progeny_data_flp.Rd man/prepare_progeny_flp.Rd man/qp4ewc_log_info.Rd man/read_file_input.Rd man/read_file_input_calf.Rd man/read_file_input_calving.Rd man/read_file_input_flp.Rd man/read_file_input_ped.Rd man/read_price_conf_fat.Rd man/save_csv_table_piechart.Rd man/transform_fleshinesss.Rd man/update_input_parameter_file.Rd man/write_mean_sd_rawAndtransform_calvscore.Rd
qp4ewc.Rproj
tests/testthat.R tests/testthat/test-calculate_abortion_rate.R tests/testthat/test-calculate_bull_liveweight.R tests/testthat/test-calculate_calvesdied24h_proportion.R tests/testthat/test-calculate_calvesdiedafter24h_proportion.R tests/testthat/test-calculate_calvingscore_proportion.R tests/testthat/test-calculate_cow_liveweight.R tests/testthat/test-calculate_dailygain.R tests/testthat/test-calculate_extrapolated_weaningweight.R tests/testthat/test-calculate_mean_birthweight.R tests/testthat/test-calculate_mean_liveweight_slaughter.R tests/testthat/test-calculate_mean_slaughterage.R tests/testthat/test-calculate_mean_weaningage.R tests/testthat/test-calculate_mean_weaningweight.R tests/testthat/test-calculate_stillbirth_rate.R tests/testthat/test-example.R tests/testthat/test-get_constants.R tests/testthat/test-read_file_input.R tests/testthat/test-read_file_input_calving.R tests/testthat/test-read_file_input_flp.R
vignettes/.gitignore
vignettes/ewbc_manual/1_Manual_Preprocess_EWBC.Rmd vignettes/ewbc_manual/2_Manual_Postprocess_EWBC.Rmd vignettes/ewbc_manual/3_Manual_Overview_scenari_EWBC.Rmd vignettes/ewdc_manual/1_Manual_Preprocess_EWDC.Rmd vignettes/ewdc_manual/2_Manual_Postprocess_EWDC.Rmd vignettes/ewdc_manual/3_Manual_Overview_scenari_EWDC.Rmd
sknqualitasag/qp4ewc documentation built on Sept. 27, 2022, 3:31 p.m.

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