Man pages for skvanburen/CompDTUReg
CompDTUReg: Fit Compositional Regression Models for DTU
| addMajorTrans | Add Major Trans Info to Existing abundance and count... |
| calcPillaiPval | Calculate the Pillai pvalue for a categorical predictor... |
| cntsToTPM | Compute TPMs from counts and effective lengths |
| CompDTUReg | Implement the CompDTU and CompDTUme regression model |
| CorrectLowExpression | Correct sample/gene combinations that have expression values... |
| DRIMSeqFilter | Filter data using filtering procedure built into _DRIMSeq_... |
| generateData | Generate a list of dataframes with TPM data by Gene |
| loadRData | Import selected object from a .RData file |
| maketx2gene | Create a tx2gene file from a .gff or .gtf file that maps each... |
| prepareData | Prepare raw adbundance/count/length data for later analysis |
| SaveFullinfRepDat | Save the datasets that contain data across all inferential... |
| SaveGeneLevelFiles | Save a file for each gene containing all information... |
| SaveInfRepDataAsRData | Save the infRep data for all genes across each unique... |
| SaveWithinSubjCovMatrices | Save the ilr-transformed within subject covariance matricies... |
| startCompDTUReg | 'startCompDTUReg' start the compositional DTU regression... |
| sumToGene | Summarize the non-inferential rep data from Salmon to gene... |
