.gitignore
DESCRIPTION
NAMESPACE
R/test.R
README.md
inst/CITATION
src/INSTALL
src/LICENSE
src/Makefile.orig
src/Makevars
src/README_DEVELOPER
src/README_USER
src/clustering_round/CONTENTS
src/clustering_round/Heap.hpp
src/clustering_round/HierarchicalClustering_main.cmdline.c
src/clustering_round/HierarchicalClustering_main.cmdline.h
src/clustering_round/HierarchicalClustering_main.cpp
src/clustering_round/HierarchicalClustering_main.ggo
src/clustering_round/HierarchicalClustering_with_unknown_edges.cpp
src/clustering_round/HierarchicalClustering_with_unknown_edges.hpp
src/clustering_round/LICENSE
src/clustering_round/Makefile
src/clustering_round/myutils/Exception.hpp
src/clustering_round/myutils/RCPtr.hpp
src/clustering_round/myutils/Readable.hpp
src/clustering_round/myutils/StreamFromFileNameGenerator.hpp
src/clustering_round/myutils/Writable.hpp
src/clustering_round/myutils/functiontracker.hpp
src/clustering_round/test_heap.cmdline.c
src/clustering_round/test_heap.cmdline.h
src/clustering_round/test_heap.cpp
src/clustering_round/test_heap.ggo
src/clustering_util/ClusteringUtil.cpp
src/clustering_util/ClusteringUtil.hpp
src/clustering_util/Definitions.hpp
src/clustering_util/Edge.hpp
src/clustering_util/EdgeCollatorMain.cmdline.c
src/clustering_util/EdgeCollatorMain.cmdline.h
src/clustering_util/EdgeCollatorMain.cpp
src/clustering_util/EdgeCollatorMain.ggo
src/clustering_util/HashingMergerMain.cmdline.c
src/clustering_util/HashingMergerMain.cmdline.h
src/clustering_util/HashingMergerMain.cpp
src/clustering_util/HashingMergerMain.ggo
src/clustering_util/IteratorAdaptor.hpp
src/clustering_util/LICENSE
src/clustering_util/Makefile
src/clustering_util/Tree.cpp
src/clustering_util/Tree.hpp
src/examples/a.UPGMA_tree
src/examples/a.desc
src/examples/a.edges.gz
src/examples/b.clustering_log
src/examples/b.desc
src/examples/b.edges.gz
src/examples/b.matlab_upgma_solution
src/examples/b.mcupgma_tree
src/examples/illegal.edges
src/scripts/CONTENTS
src/scripts/LICENSE
src/scripts/cluster.pl
src/scripts/clustering.mk
src/scripts/clustering_iteration.mk
src/scripts/count_edges.csh
src/scripts/definitions.mk
src/scripts/file_k_split.pl
src/scripts/install_path.mk
src/scripts/list_tree_thresholds.csh
src/scripts/merger.mk
src/scripts/merger.no_split.mk
src/scripts/seq.pl
src/scripts/smart_cat
src/scripts/validate_input_edges.pl