Man pages for snikumbh/seqArchR
Identify Different Architectures of Sequence Elements
| collate_clusters | Collate sequence IDs from an existing clustering according to... |
| collate_seqArchR_result | Collate raw clusters at the chosen iteration of seqArchR... |
| get_clBasVec | Get functions for seqArchR result object |
| get_one_hot_encoded_seqs | Get one-hot encoded sequences |
| get_seqs_clust_list | Retrieve sequence clusters as a list from the sequence labels |
| make_PWMs | Make a PWM-resembling matrix out of a given n-vector |
| plot_arch_for_clusters | Plot cluster architectures as sequence logos. |
| plot_ggseqlogo_of_seqs | Plot sequence logo of a collection of sequences |
| prepare_data_from_FASTA | Generate one-hot encoding of sequences given as FASTA file |
| seqArchR | seqArchR: A package for de novo discovery of different... |
| seqs_str | Get sequences from the seqArchR result object |
| set_config | Set seqArchR run configuration |
| viz_bas_vec | Visualize the NMF basis vectors |
| viz_pwm | Visualize a position weight matrix as a heatmap or sequence... |
| viz_seqs_acgt_mat | Visualize raw DNA sequences as an image |
