API for songw01/MEGENA
Multiscale Clustering of Geometrical Network
| Global functions | |
|---|---|
| FrequenctSets.v6.2.RData | Man page |
| MEGENA | Man page |
| MEGENA-package | Man page |
| MEGENA.ModuleSummary | Man page Source code |
| ModuleHubProfileSingle | Source code |
| ModuleHubProfiles | Source code |
| ModulePrinComps | Source code |
| Sample_Expression.RData | Man page |
| anyNA | Source code |
| calculate.PFN | Man page |
| calculate.correlation | Source code |
| calculate.rho.signed | Man page Source code |
| calculate.rho.twoMat | Source code |
| cluster.scales | Source code |
| coerce.manyTables | Source code |
| collect.table.features | Source code |
| combine.table | Source code |
| compact.indiv | Source code |
| compute.PFN.par | Man page Source code |
| computeModuleLinks | Source code |
| count.FD | Source code |
| datExpr | Man page |
| do.FisherExactTest | Source code |
| do.MEGENA | Man page Source code |
| draw_sunburst_wt_fill | Man page Source code |
| evaluate.boundary | Source code |
| evaluate.flow | Source code |
| evaluate.significance | Source code |
| extract.module_with_hub | Source code |
| flatten.table | Source code |
| geneSet.to.Membership | Source code |
| get.DB.index | Source code |
| get.DegreeHubStatistic | Man page Source code |
| get.DegreeProfiles | Source code |
| get.LPI | Source code |
| get.connectedModule | Source code |
| get.geneSet.nodeInfo | Source code |
| get.hub.summary | Man page Source code |
| get.intraModule.distance | Source code |
| get.median | Source code |
| get.moduleMedian | Source code |
| get.multiScale.hubs | Source code |
| get.network.metric | Source code |
| get.nodeTopoInfo | Source code |
| get.random.D | Source code |
| get.randomPlanar | Source code |
| get.scalwiseHubs | Source code |
| get.subnetworks | Source code |
| get.union.cut | Man page Source code |
| get_module_hierarchy_graph | Man page Source code |
| iplanarityTesting | Source code |
| iterative.boundaryUpdate | Source code |
| make.Pairwise.Tables | Source code |
| make.paired.Tables | Source code |
| match.connected | Source code |
| membership.to.geneSet | Source code |
| module.flowMatrix | Source code |
| module_convert_to_table | Man page Source code |
| module_rank | Source code |
| nested.kmeans | Source code |
| nested.kmeans.all | Source code |
| output.geneSet.file | Man page Source code |
| pam.cleanSplit | Source code |
| pam.split | Source code |
| perform.AllPairs.FET | Man page Source code |
| perform.ijPairs.FET | Man page Source code |
| planaritytest | Man page Source code |
| plot_module | Man page Source code |
| plot_module_hierarchy | Man page Source code |
| plot_subgraph | Man page Source code |
| random.T1 | Source code |
| random.T2 | Source code |
| read.geneSet | Man page Source code |
| resume.calculate.PFN | Man page |
| serial.PFN | Source code |
| test.pairwiseCor | Source code |
| test.pairwiseCor.par | Source code |
