API for spapillon/CopyNumber450k
R package for calling CNV from Illumina 450k methylation microarrays
| Global functions | |
|---|---|
| CNV450kSet | Man page Source code |
| CNV450kSet-class | Man page |
| CopyNumber450k | Man page |
| buildControlMatrix450k | Source code |
| computeSignificance | Man page |
| computeSignificance,CNV450kSet-method | Man page |
| dropSNPprobes | Man page |
| dropSNPprobes,CNV450kSet-method | Man page |
| extractControls | Source code |
| extractFromRGChannelSet450k | Source code |
| findCNV | Man page |
| findCNV,CNV450kSet-method | Man page |
| functionalNormalization | Source code |
| getManifest | Man page |
| getManifest,CNV450kSet-method | Man page |
| getSegments | Man page |
| getSegments,CNV450kSet-method | Man page |
| getSummary | Man page |
| getSummary,CNV450kSet-method | Man page |
| intersectCNV | Man page |
| intersectCNV,CNV450kSet-method | Man page |
| normalize | Man page |
| normalize,CNV450kSet-method | Man page |
| normalizeByType | Source code |
| plotDensity | Man page |
| plotDensity,CNV450kSet-method | Man page |
| plotPCA | Man page |
| plotPCA,CNV450kSet-method | Man page |
| plotSample | Man page |
| plotSample,CNV450kSet-method | Man page |
| quantileNormalization | Source code |
| returnFit | Source code |
| segmentize | Man page |
| segmentize,CNV450kSet-method | Man page |
| subgroupDifference | Man page |
| subgroupDifference,CNV450kSet-method | Man page |
| subgroupDifferenceCNVByType | Source code |
| write.csv,CNV450kSet-method | Man page |
