Man pages for ssdxj/R418
Self use R codes
| calc_Chl | wet Chl calc |
| collect_caret_metrics | collect gof from do_caret_VI and do_caret_bands result |
| collect_caret_metrics_fullStage | collect gof from do_caret_VI and do_caret_bands result(full... |
| collect_caret_ObsVsPred | obs vs pred plot from do_caret_VI and do_caret_bands result |
| collect_caret_VIcurve | generate df_curve from do_caret_VI result |
| createDataPartition_2col | inTrain/Test split wrapper -> add inTrain column for a df |
| createDataPartition_2PlotIDdict | inTrain/Test split wrapper -> return list of inTrain/Test... |
| do_caret_bands | caret::train wrapper to fit biochemphy~bands machine learning... |
| do_caret_VI | caret::train wrapper to fit biochemphy~index curve |
| dot-calc_DANIR | helper for VI: DANIR |
| dot-calc_mREIP | helper to get REP using Gaussain fit, because the... |
| dot-calc_NAOC | helper for VI: NAOC |
| dot-calc_REP_multi | helper to get REP considering multi REP simuation |
| dot-calc_REP_sg | helper to get REP by defination (max d1) |
| dot-calc_SF | helper for VI: SF |
| dot-calc_TTVI | helper for VI: TTVI |
| dot-calc_VNAI | helper for VI:VNAI |
| dot-print_error | helper for 'stop()' function |
| generate_fm | all bands model formula generator |
| get_indexCV | Create repeated n fold corss-validation index |
| gglm | shortcut obs vs pred scatter plot for 'lm' obj |
| layer_DenseTransposeTiedLayer | warpper to generate keras tied layer |
| LbyL_heatmap_R2 | heatmap plot of 'wrapper_LbyL' function result. |
| LbyL_resp_fun_DVI | resp_fun for 'wrapper_LbyL' to calc DVI index |
| LbyL_resp_fun_NDVI | resp_fun for 'wrapper_LbyL' to calc NDVI index |
| LbyL_resp_fun_SR | resp_fun for 'wrapper_LbyL' to calc SR index |
| LbyL_stat_fun_r2 | stat_fun for 'wrapper_LbyL' to calc r2 of lm fit |
| modelInfo_bear | modelInfo for caret doing bear's law VI curve fitting |
| modelInfo_bearReverse | modelInfo for caret doing bear's law VI curve fitting |
| modelInfo_exp | modelInfo for caret doing exp VI curve fitting |
| modelInfo_GP | GauPro Gasussian Process modelinfo for caret |
| modelInfo_rf_mtry_ntree | modelInfo fore caret doing rf tuning both mtry and ntree |
| paletteCb | The palette with grey: |
| paletteCbb | The palette with black: |
| paletteHm | heatmap palette |
| paletteJetter | palette Jetter |
| parser_cubert_export | parser for Cubert export txt file |
| parser_ENVIROIstat | parser for ENVI ROI stat file, the ROIs are from shpfile by... |
| parser_ForceA | parser of ForceA |
| parser_sig | parser of single HR1024i sig file |
| parser_sig_2df | a svc sig file parser |
| parser_sigs | Wrapper of 'parser_sig', to parse all sig files in a dir. |
| parser_sunScan | parser of SunScan file |
| predict_keras_spc | wrapper for do predict of SAE models and turn result to spc |
| raster_calc | Hyperspectral raster calculation |
| spc_2bandVI_test | A quick check of a new two band index by give bands and... |
| spc_2df | Speclib obj to wide df |
| spc_2dfB | Speclib obj to wide df (reflect col with 'B_' prefix) |
| spc_2df_withMask | Title |
| spc_2logReverse | ref to log(1/ref) |
| spc_add_inTrain | add a inTrain column into spc's SI |
| spc_add_inTrain_sdates | add a inTrain column into spc's SI considering the sdate... |
| spc_addNoise | add gaussian noise to a speclib |
| spc_ave | Self use function. Average spc SampleID or PlotID or... |
| spc_bandwiseCor | spc bandwise cor |
| spc_fromDf | generate 'Speclib' obj from data.frame, reflectance selected... |
| spc_from_sigs | generate spc obj form parsed contents |
| spc_generator | genearate Speclib obj from: csv file or data.frame |
| spc_index_scatter | scatter plot between biochemphy and index from spc and... |
| spc_melt | spc or spc_df to long df |
| spc_plot_all | plot all spectra of a speclib |
| spc_plot_filters | plot selected spectra of a speclib, selected by index vector... |
| spc_plot_sd | plot mean, mean+sd and mean-sd spectra of ad speclib |
| spc_rbind | rbind spc |
| spc_resample | resample spc_sim tospc_obs spectra resolution |
| spc_test_inTrain | a boxplot for check the inTrain/Test split |
| spec_rf | Title |
| spec_svm | Title |
| ssdxj_rededge | Title |
| ssdxj_rededge_apply | Title |
| ssdxj_vegindex | lapply wrapper for hsdar::vegetation index |
| themeDotplot | theme for dotchart plot |
| tidymodels_linearReg | tidymodel routine for fitting a linear VI vs biochemphy... |
| tidymodels_ML | Title |
| workflow_curve_plot | plot the fitted curve |
| workflow_post_plot | obs vs pred scatter plot |
| wrapper_LbyL | wrapper for doing LbyL VI |
