Man pages for stemangiola/ARMET
Higher-Order Deconvolution Survival Analyses
| add_cox_test | add_cox_test |
| ancestor_child | Data frame of the link between nodes of the cell tree |
| ARMET-package | The 'ARMET' package. |
| ARMET_tc_continue | ARMET_tc_continue |
| as_matrix | Get matrix from tibble |
| cmdstanr_ARMET_tc_fix_hierarchical | Model for cmdstanr |
| convoluted_glm | convoluted_glm main |
| create_design_matrix | Create the design matrix |
| ct_names_polar | Abbreviations for magnolia plot |
| error_if_counts_is_na | Check whether there are NA counts |
| error_if_duplicated_genes | Check whether there are duplicated genes/transcripts |
| estimate_convoluted_lm | estimate_convoluted_lm |
| get_sample_transcript_counts | Get column names either from user or from attributes |
| hierarchy_reference | Reference signatures |
| house_keeping_genes | House keeping genes list |
| ifelse2_pipe | This is a generalisation of ifelse that acceots an object and... |
| ifelse3_pipe | This is a generalisation of ifelse that acceots an object and... |
| ifelse4_pipe | This is a generalisation of ifelse that acceots an object and... |
| ifelse_pipe | This is a generalisation of ifelse that acceots an object and... |
| n_markers | Number of markers to select from the reference |
| no_hierarchy_reference | Reference signatures |
| plot_markers | This is a generalisation of ifelse that acceots an object and... |
| plot_polar | plot_polar |
| plot_scatter | plot_scatter |
| setup_convolved_lm | ARMET-tc main |
| tree | Cell tree |
| vb_iterative | vb_iterative |
