Files in stemangiola/tidyHeatmap
A Tidy Implementation of Heatmap
.Rbuildignore
.coveralls.yml
.github/workflows/R-CMD-check.yml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/data.R
R/deprecated_framework.R
R/functions.R
R/ggsave.R
R/methods.R
R/patchwork.R
R/subset.R
R/utilities.R
R/validation.R
R/zzz.R
README.Rmd
README.md
codecov.yml
data/N52.rda
data/pasilla.rda
doc/introduction.R
doc/introduction.Rmd
doc/introduction.html
docs/.txt
inst/CITATION
inst/NEWS.rd
inst/Thumbs.db
inst/WORDLIST
inst/logo.png
inst/logo.svg
man/N52.Rd
man/add_annotation.Rd
man/add_attr.Rd
man/add_bar-method.Rd
man/add_class.Rd
man/add_line-method.Rd
man/add_point-method.Rd
man/add_tile-method.Rd
man/annot_to_list.Rd
man/annotation_bar-method.Rd
man/annotation_line-method.Rd
man/annotation_point-method.Rd
man/annotation_tile-method.Rd
man/as_ComplexHeatmap-method.Rd
man/as_matrix.Rd
man/check_if_counts_is_na.Rd
man/check_if_duplicated_genes.Rd
man/check_if_wrong_input.Rd
man/drop_class.Rd
man/error_if_log_transformed.Rd
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-maturing.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-retired.svg
man/figures/lifecycle-soft-deprecated.svg
man/figures/lifecycle-stable.svg
man/figures/unnamed-chunk-17-1.png
man/fragments/figures/borders-1.png
man/fragments/figures/custom-1.png
man/fragments/figures/customtile-1.png
man/fragments/figures/customtile2-1.png
man/fragments/figures/distance-1.png
man/fragments/figures/droprow-1.png
man/fragments/figures/flexible-1.png
man/fragments/figures/grouping-1.png
man/fragments/figures/grouping2-1.png
man/fragments/figures/heatmap-1.png
man/fragments/figures/layer-1.png
man/fragments/figures/layertext-1.png
man/fragments/figures/manyannotations-1.png
man/fragments/figures/multiple-1.png
man/fragments/figures/nolegend-1.png
man/fragments/figures/patchworkintegrate-1.png
man/fragments/figures/redblue-1.png
man/fragments/figures/reorder-1.png
man/fragments/figures/sidebyside-1.png
man/fragments/figures/sidelegend-1.png
man/fragments/figures/size-1.png
man/fragments/figures/sizecolumns-1.png
man/fragments/figures/sizedendro-1.png
man/fragments/figures/split-1.png
man/fragments/figures/split2-1.png
man/fragments/figures/title-1.png
man/fragments/figures/title2-1.png
man/fragments/intro.Rmd
man/fragments/intro.html
man/get_abundance_norm_if_exists.Rd
man/get_elements.Rd
man/get_elements_features.Rd
man/get_elements_features_abundance.Rd
man/get_sample_counts.Rd
man/get_sample_transcript.Rd
man/get_sample_transcript_counts.Rd
man/get_x_y_annotation_columns.Rd
man/heatmap-method.Rd
man/ifelse2_pipe.Rd
man/ifelse_pipe.Rd
man/input_heatmap.Rd
man/layer_arrow_down-method.Rd
man/layer_arrow_up-method.Rd
man/layer_asterisk-method.Rd
man/layer_diamond-method.Rd
man/layer_point-method.Rd
man/layer_square-method.Rd
man/layer_star-method.Rd
man/layer_text-method.Rd
man/parse_formula.Rd
man/pasilla.Rd
man/prepend.Rd
man/quo_names.Rd
man/save_pdf-Heatmap-method.Rd
man/save_pdf-InputHeatmap-method.Rd
man/save_pdf-methods.Rd
man/scale_design.Rd
man/scale_robust.Rd
man/select_closest_pairs.Rd
man/split-methods.Rd
man/wrap_heatmap-method.Rd
paper/paper.bib
paper/paper.md
paper/paper.pdf
paper/paper_tables_and_figures.Rmd
paper/paper_tables_and_figures.md
paper/paper_tables_and_figures_files/figure-gfm/example_figure-1.png
tests/testthat.R
tests/testthat/.gitignore
tests/testthat/Rplots.pdf
tests/testthat/_snaps/tests/annotated-heatmap-1.svg
tests/testthat/_snaps/tests/annotated-heatmap-2.svg
tests/testthat/_snaps/tests/base.svg
tests/testthat/_snaps/tests/colorramp2.svg
tests/testthat/_snaps/tests/grouped-annotated-heatmap-1.svg
tests/testthat/_snaps/tests/grouped-annotated-heatmap-2.svg
tests/testthat/_snaps/tests/grouped-custom-color-both.svg
tests/testthat/_snaps/tests/grouped.svg
tests/testthat/_snaps/tests/layer-symbol.svg
tests/testthat/_snaps/tests/legend.svg
tests/testthat/_snaps/tests/multi-type.svg
tests/testthat/_snaps/tests/patchwork-padding.svg
tests/testthat/_snaps/tests/plus-operator.svg
tests/testthat/_snaps/tests/scale-both.svg
tests/testthat/_snaps/tests/scale-column.svg
tests/testthat/_snaps/tests/scale-none.svg
tests/testthat/_snaps/tests/scale-row.svg
tests/testthat/_snaps/tests/show-heatmap-legend.svg
tests/testthat/_snaps/tests/size-annotation.svg
tests/testthat/_snaps/tests/sparse-matrix.svg
tests/testthat/_snaps/tests/sparse.svg
tests/testthat/_snaps/tests/split.svg
tests/testthat/_snaps/tests/text-base.svg
tests/testthat/_snaps/tests/text-complex.svg
tests/testthat/_snaps/tests/text-multiple.svg
tests/testthat/_snaps/tests/text-with-size-column.svg
tests/testthat/_snaps/tests/text-with-size.svg
tests/testthat/_snaps/tests/text-with-text-column.svg
tests/testthat/_snaps/tests/tile-colorramp2-palette.svg
tests/testthat/_snaps/tests/tile-factor-custom-palette.svg
tests/testthat/_snaps/tests/wrap-heatmap.svg
tests/testthat/spelling.R
tests/testthat/tests.R
vignettes/introduction.Rmd
