Man pages for stemangiola/tidyHeatmap
A Tidy Implementation of Heatmap
| add_annotation | add_annotation |
| add_attr | Add attribute to abject |
| add_bar-method | DEPRECATED. Adds a bar annotation layer to a 'InputHeatmap',... |
| add_class | Add class to abject |
| add_line-method | DEPRECATED. Adds a line annotation layer to a 'InputHeatmap',... |
| add_point-method | DEPRECATED. Adds a point annotation layer to a... |
| add_tile-method | DEPRECATED. Adds a tile annotation layer to a 'InputHeatmap',... |
| annotation_bar-method | Adds a bar annotation layer to a 'InputHeatmap', that on... |
| annotation_line-method | Adds a line annotation layer to a 'InputHeatmap', that on... |
| annotation_point-method | Adds a point annotation layer to a 'InputHeatmap', that on... |
| annotation_tile-method | Adds a tile annotation layer to a 'InputHeatmap', that on... |
| annot_to_list | annot_to_list |
| as_ComplexHeatmap-method | Creates a 'ComplexHeatmap' object for less standard plot... |
| as_matrix | Get matrix from tibble |
| check_if_counts_is_na | Check whether there are NA counts |
| check_if_duplicated_genes | Check whether there are duplicated genes/transcripts |
| check_if_wrong_input | Check whether there are NA counts |
| drop_class | Remove class to abject |
| error_if_log_transformed | Check whether a numeric vector has been log transformed |
| get_abundance_norm_if_exists | Get column names either from user or from attributes |
| get_elements | Get column names either from user or from attributes |
| get_elements_features | Get column names either from user or from attributes |
| get_elements_features_abundance | Get column names either from user or from attributes |
| get_sample_counts | Get column names either from user or from attributes |
| get_sample_transcript | Get column names either from user or from attributes |
| get_sample_transcript_counts | Get column names either from user or from attributes |
| get_x_y_annotation_columns | get_x_y_annotation_columns |
| heatmap-method | Creates a 'InputHeatmap' object from 'tbl_df' on evaluation... |
| ifelse2_pipe | This is a generalisation of ifelse that accepts an object and... |
| ifelse_pipe | This is a generalisation of ifelse that accepts an object and... |
| input_heatmap | input_heatmap |
| layer_arrow_down-method | Adds a layers of symbols above the heatmap tiles to a... |
| layer_arrow_up-method | Adds a layers of symbols above the heatmap tiles to a... |
| layer_asterisk-method | Adds a layer of symbols above the heatmap tiles to a... |
| layer_diamond-method | Adds a layers of symbols above the heatmap tiles to a... |
| layer_point-method | Adds a layers of symbols above the heatmap tiles to a... |
| layer_square-method | Adds a layers of symbols above the heatmap tiles to a... |
| layer_star-method | Adds a layer of symbols above the heatmap tiles to a... |
| layer_text-method | Adds a layers of texts above the heatmap tiles to a... |
| N52 | Example data set N52 |
| parse_formula | .formula parser |
| pasilla | Example data set Pasilla |
| prepend | From rlang deprecated |
| quo_names | Convert array of quosure (e.g. c(col_a, col_b)) into... |
| save_pdf-Heatmap-method | save_pdf |
| save_pdf-InputHeatmap-method | save_pdf |
| save_pdf-methods | Save plot on PDF file |
| scale_design | Scale design matrix |
| scale_robust | Scale counts in a robust way against sd == 0 |
| select_closest_pairs | Sub function of... |
| split-methods | Split the heatmap row-wise depending on the biggest branches... |
| wrap_heatmap-method | Wrap tidyHeatmap (ComplexHeatmap) in a patchwork-compliant... |
