API for stephenslab/fastTopics
Fast Algorithms for Fitting Topic Models and Non-Negative Matrix Factorizations to Count Data
| Global functions | |
|---|---|
| annotation_heatmap | Man page |
| ccd_kl_update2_rcpp | Source code |
| ccd_kl_update_rcpp | Source code |
| ccd_update_factors_parallel_rcpp | Source code |
| ccd_update_factors_rcpp | Source code |
| ccd_update_factors_sparse_parallel_rcpp | Source code |
| ccd_update_factors_sparse_rcpp | Source code |
| compare_fits | Man page |
| cost | Man page |
| cost_rcpp | Source code |
| cost_sparse_rcpp | Source code |
| de_analysis | Man page |
| de_analysis_control_default | Man page Source code |
| deviance_poisson_nmf | Man page |
| embedding_plot_2d | Man page |
| embedding_plot_2d_ggplot_call | Man page |
| fit_multinom_model | Man page |
| fit_poisson_nmf | Man page |
| fit_poisson_nmf_control_default | Man page Source code |
| fit_topic_model | Man page |
| init_poisson_nmf | Man page |
| init_poisson_nmf_from_clustering | Man page |
| le_diff_rcpp | Source code |
| loadings_plot | Man page |
| loadings_plot_ggplot_call | Man page |
| loglik_multinom_topic_model | Man page |
| loglik_poisson_nmf | Man page |
| loglik_vs_rank_ggplot_call | Man page |
| merge_topics | Man page |
| mixem_rcpp | Source code |
| multinom2poisson | Man page |
| newsgroups | Man page |
| pbmc_facs | Man page |
| pca_from_topics | Man page |
| pca_hexbin_plot | Man page |
| pca_hexbin_plot_ggplot_call | Man page |
| pca_plot | Man page |
| plot.multinom_topic_model_fit | Man page |
| plot.poisson_nmf_fit | Man page |
| plot.topic_model_de_analysis | Man page |
| plot_loglik_vs_rank | Man page |
| plot_progress | Man page |
| pnmfem_update_factors_parallel_rcpp | Source code |
| pnmfem_update_factors_rcpp | Source code |
| pnmfem_update_factors_sparse_parallel_rcpp | Source code |
| pnmfem_update_factors_sparse_rcpp | Source code |
| poismixem2_rcpp | Source code |
| poismixem3_rcpp | Source code |
| poismixem_rcpp | Source code |
| poisson2multinom | Man page |
| predict.multinom_topic_model_fit | Man page |
| predict.poisson_nmf_fit | Man page |
| print.summary.multinom_topic_model_fit | Man page |
| print.summary.poisson_nmf_fit | Man page |
| run_homer | Man page |
| scd_kl_update2_rcpp | Source code |
| scd_kl_update_rcpp | Source code |
| scd_update_factors_parallel_rcpp | Source code |
| scd_update_factors_rcpp | Source code |
| scd_update_factors_sparse_parallel_rcpp | Source code |
| scd_update_factors_sparse_rcpp | Source code |
| select | Man page |
| select.multinom_topic_model_fit | Man page |
| select.poisson_nmf_fit | Man page |
| select_loadings | Man page |
| simulate_count_data | Man page |
| simulate_multinom_gene_data | Man page |
| simulate_poisson_gene_data | Man page |
| simulate_posterior_poisson_rcpp | Source code |
| simulate_posterior_poisson_sparse_rcpp | Source code |
| simulate_toy_gene_data | Man page |
| structure_plot | Man page |
| structure_plot_default_embed_method | Man page |
| structure_plot_ggplot_call | Man page |
| summary.multinom_topic_model_fit | Man page |
| summary.poisson_nmf_fit | Man page |
| tsne_from_topics | Man page |
| tsne_plot | Man page |
| umap_from_topics | Man page |
| umap_plot | Man page |
| volcano_plot | Man page |
| volcano_plot_do_label_default | Man page |
| volcano_plot_ggplot_call | Man page |
| volcano_plot_ly_call | Man page |
| volcano_plotly | Man page |
| x_over_crossprod_rcpp | Source code |
