Files in stephenslab/poisson.mash.alpha
Poisson Multivariate Adaptive Shrinkage
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/data.R
R/elbo.R
R/initialize.R
R/other_updates.R
R/pois_cov_canonical.R
R/pois_cov_ed.R
R/pois_cov_init.R
R/pois_mash.R
R/pois_mash_posterior.R
R/pois_mash_prefit.R
R/set_data.R
R/simulations.R
R/update_q.R
R/update_q_beta.R
R/update_q_eta.R
R/update_q_theta.R
R/update_rho.R
R/util.R
README.md
_pkgdown.yml
data/condition_colors.RData
data/neutrophils_pois_mash_ruv_fit.RData
data/neutrophils_subset.RData
data/neutrophils_whole.RData
data/sim_raw.RData
docs/404.html
docs/LICENSE-text.html
docs/articles/index.html
docs/articles/intro_poisson_mash.html
docs/articles/intro_poisson_mash_files/figure-html/mixture-proportion-1.png
docs/articles/intro_poisson_mash_files/figure-html/mixture-proportions-1.png
docs/articles/intro_poisson_mash_files/figure-html/plot-lfc-1-1.png
docs/articles/intro_poisson_mash_files/figure-html/plot-lfc-1.png
docs/articles/intro_poisson_mash_files/figure-html/plot-lfc-2-1.png
docs/articles/intro_poisson_mash_files/figure-html/plot-lfc-2.png
docs/articles/intro_poisson_mash_files/figure-html/plot-sharing-pattern-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/index.html
docs/reference/pois_cov_canonical.html
docs/reference/pois_cov_ed.html
docs/reference/pois_cov_init.html
docs/reference/pois_mash.html
docs/reference/pois_mash_posterior.html
docs/reference/pois_mash_prefit.html
docs/reference/pois_mash_set_data.html
docs/reference/pois_mash_sim_data.html
docs/reference/sim_raw.html
docs/sitemap.xml
inst/code/application_neutrophils.R
man/pois_cov_canonical.Rd
man/pois_cov_ed.Rd
man/pois_cov_init.Rd
man/pois_mash.Rd
man/pois_mash_posterior.Rd
man/pois_mash_prefit.Rd
man/pois_mash_set_data.Rd
man/pois_mash_sim_data.Rd
man/sim_raw.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/update_rho.cpp
tests/testthat.R
tests/testthat/test_pois_mash.R
vignettes/intro_poisson_mash.Rmd
