Man pages for steveneschrich/CLIApet
CLIA Performance Evaluation Toolkit: An R Library For Supporting Gene Expression Based CLIA Validation Studies
| build_sct | Build an SCT from an ExpressionSet |
| correlation_coefficient_heatmap | Create a correlation coefficient heatmap figure. |
| filter_variance_by_row | Filter rows to those having high enough variance. |
| generate_sample_sample_density_plot_list | Generate a list of sample/sample density plots. |
| load_and_process_celfiles | Load and process a celfile dataset. |
| load_celfiles | Load an experimental CEL file dataset. |
| mds_plot | Createa a ggplot-based MDS plot of gene expression data. |
| pair_with | Pair a sample (n) with all the other samples in the matrix m. |
| pca_plot | Create a PCA ggplot of gene expression data. |
| pivot_sct | Internal function to pivot a SCT |
| plot_sct | Plot a sample-condition table |
| plot_sct_by_sample | Generate sct plots by sample as a list. |
| process_celfiles | Process CEL files by RMA normalization, then compute RSI. |
| sample_sample_density_plot | Generate a nice sample-sample density plot of two samples in... |
| sample_sample_plot | Create a sample-sample scatter plot. |
