Man pages for steveneschrich/msva
Surrogate Variable Analysis
| ComBat | Adjust for batch effects using an empirical Bayes framework |
| ComBat_seq | Adjust for batch effects using an empirical Bayes framework... |
| empirical.controls | A function for estimating the probability that each gene is... |
| f.pvalue | A function for quickly calculating f statistic p-values for... |
| fstats | A function for quickly calculating f statistics for use in... |
| fsva | A function for performing frozen surrogate variable analysis... |
| irwsva.build | A function for estimating surrogate variables by estimating... |
| num.sv | A function for calculating the number of surrogate variables... |
| psva | A function for estimating surrogate variables with the two... |
| qsva | A function for computing quality surrogate variables (qSVs) |
| read.degradation.matrix | A function for reading in coverage data from... |
| ssva | A function for estimating surrogate variables using a... |
| sva | sva: a package for removing artifacts from microarray and... |
| sva.check | A function for post-hoc checking of an sva object to check... |
| sva_network | A function to adjust gene expression data before network... |
| svaseq | A function for estimating surrogate variables for count based... |
| twostepsva.build | A function for estimating surrogate variables with the two... |
