Man pages for steveneschrich/saeAffy
A Collection of Utilities for Gene Expression Biomarkers.
| activateAnnotation | activateAnnotation - Get the right annotation (possibly... |
| featureSubset | Reduce an ExpressionSet by a given list of ids. Note the ids... |
| getAnnotation | getAnnotation - get the annotation table for a given... |
| getAnnotationByEntrezID | getAnnotationByEntrezID - get the annotation table of... |
| getAnnotationBySymbol | getAnnotationByEnsembl - get the annotation table of ensembl... |
| getAnnotationList | getAnnotationList - get the annotation list for a given type |
| getExpressionSetByEntrezID | This function takes an expression set (assumed to be... |
| getExpressionSetByGeneSymbol | This function takes an expression set (assumed to be... |
| install_estimate | Install the ESTIMATE software (it is in a custom location) |
| readGCT | Read a GCT-formatted file into an ExpressionSet object. |
| runEstimate | Run the ESTIMATE algorithm on an ExpressionSet, and return... |
| writeGCT | Write an ExpressionSet to a GCT-formatted output file. |
