Files in stp4freedom/HW4_GLM_GWAS
Genome Wide Efficient Association Test (GWhEAT)
.Rbuildignore
.Rd2pdf10604/Rd2.tex
.gitignore
CROPS545_Covariates.txt
CROPS545_Phenotype.txt
DESCRIPTION
GAPIT_Tutorial_Data.zip
GAPIT_Tutorial_Data/Copy of Q_First_Three_Principal_Components.txt
GAPIT_Tutorial_Data/Input_Matrix_for_GS_Heat_Map.txt
GAPIT_Tutorial_Data/KSN.txt
GAPIT_Tutorial_Data/mdp_SNP_information.txt
GAPIT_Tutorial_Data/mdp_SNP_information1.txt
GAPIT_Tutorial_Data/mdp_SNP_information2.txt
GAPIT_Tutorial_Data/mdp_SNP_information3.txt
GAPIT_Tutorial_Data/mdp_genotype_chr1.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr10.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr2.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr3.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr4.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr5.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr6.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr7.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr8.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_chr9.hmp.txt
GAPIT_Tutorial_Data/mdp_genotype_test.hmp.txt
GAPIT_Tutorial_Data/mdp_numeric.txt
GAPIT_Tutorial_Data/mdp_numeric1.txt
GAPIT_Tutorial_Data/mdp_numeric2.txt
GAPIT_Tutorial_Data/mdp_numeric3.txt
GAPIT_Tutorial_Data/mdp_traits.txt
GAPIT_Tutorial_Data/mdp_traits_validation.readme.txt
GAPIT_Tutorial_Data/mdp_traits_validation.txt
GAPIT_Tutorial_Data/xv.txt
GWAS_apply_demo.Rmd
GWAS_test_demo.Rmd
GWAStest.Rproj
Homework_4.Rmd
NAMESPACE
R/Function_Significance_Error_Tests.R
R/Function_fix_Dep.R
R/Function_manhattan.R
R/Function_qqplot.R
R/GWAS_apply.R
R/GWAS_rapid.R
R/GWAS_test.R
Reference_Manual.pdf
User_Manual.Rmd
User_Manual.html
User_Manual.pdf
man/GWASapply.Rd
man/GWAStest.Rd
man/fix_Dep.Rd
man/manhattan_plot.Rd
man/power.fdr.Rd
man/qq_plot.Rd
mdp_SNP_information.txt
wheatclipart.png
