| abbrevSiteName | Abbreviate a site name |
| addToSurv.csv | Add files to surv.csv |
| all.standardTtColor | Check if twist-ties abbreviation are legitimate. |
| batchSummary | The batch summary function summarizes information from... |
| cgFieldCheck | Create field check dataframes for common gardens 1, 2, and... |
| cgIds | Link cgPlaId, cgCd, and expNm for experimental plots 1, 2, 6,... |
| check.batch | Compare letnos or nolets from scan files with harvest list... |
| check.year | Compare letnos or nolets from scan files with harvest list... |
| combineMassFiles | combine raw mas data txt file into useful output |
| compare2vectors | Compare the contents of two vectors |
| convertDicom | Convert dicom files into jpeg files |
| convertXMLtoRdata | Convert an XML file to RData |
| createCSV | create assignment csv to upload |
| echinaceaLab-package | echinaceaLab: useful functions for the Echinacea Project |
| empty | count values less than a threshold value |
| errorCheckRData | Check for GPS errors |
| estimateSeedSet | Estimate seed set in a head |
| exinaceaLab-paxage | exinaceaLab |
| exPt01CoreDataSummary | Generate summary and upload status of exPt01 core dataset |
| full | Count values greater than a threshold value |
| getHeadIDPiece | Get one piece of the headID |
| hh.2012 | Information about heads harvested from cg1 in 2012. |
| hh.2013 | Information about heads harvested from cg1 in 2013. |
| hh.2014 | Information about heads harvested from p1 and p2 in 2014. |
| hh.2015 | Information about heads harvested from p1 and p2 in 2015. |
| hh.2016 | Information about heads harvested from p1 and p2 in 2016. |
| hh.2017 | Information about heads harvested from p1 and p2 in 2017. |
| hh.2018 | Information about heads harvested from p1, p2, and p7 in... |
| hh.2019 | Information about heads harvested from p1, p2, p8, and p9 in... |
| hh.2020 | Information about heads harvested from p1, p2, p5, p7, p8,... |
| hh.2021 | Information about heads harvested from p1, p2, p5, p6, p7,... |
| hh.2022 | Information about heads harvested from p1, p2, p6, p7, p8 and... |
| hh.2023 | Information about heads harvested from p1, p2, p5, p6, p7,... |
| hh.2024 | Information about heads harvested from p1, p2, p6, p7, p8,... |
| investigateMassFiles | investigate all txt files in a directory |
| listBadFiles | Find mass files that don't make proper csvs, |
| loadScans | create a data frame of scan filenames and batch ids. |
| makeCGGraphs | Write plots of characters for common garden experiments 1, 2,... |
| makeGPSFileName | Make standard GPS job name |
| makeGridInsets | Generate x-ray grid insets |
| makeXrayDataSheet | Create data sheet rows for x-ray progress in a given year. |
| makeXrayDf | Make x-ray data frame |
| manageCountData | This function can be used to check count data for errors |
| readMassFile | Edit the raw mass data files into useful objects. |
| recheckCG | Create recheck, staple, and skip data frames for common... |
| remeasureCG | Create remeasure and updated measure data frames for common... |
| splitXrayImage | Split x-ray image |
| standardizeTtColors | Standardize twist-tie colors |
| transferFiles | Transfer files from one folder to another |
| transferScanFiles | Transfer files from all subfolders to analogous subfolders |
| visualizeAceProgress | Visualize ACE progress in the lab |
| writeUploadCSV | Check scans then create and write an upload csv |
