Man pages for sxmorgan/ansimo
ANalysis and SIMulation of Omics data
| batchtools.simulate.dynamic | Wrapper function for simulations attempting to use batchtools... |
| characterize.metadata | Represent a metadata table as a single string |
| check.tbl.dim | Helper function to check if nested tibble is labeled or not |
| correct.metadata | Check and correct types of metadata table |
| count.to.abundances | Transform counts to relative abundances |
| dyn.rng | Calculates the dynamic range of a given feature |
| feat.summary.stats | Calculates summary statistics for each feature |
| get.feat.names | Retrieve files with informative feature names |
| get.metadata.vars | Get name and type of metadata variables available in data |
| join.selected.metadata | Join metadata to data |
| parse.sample.names | Split sample names |
| reconstruct.abundance.tbl | Reconstruct feature abundance table from tidy format |
| reconstruct.metadata | Reconstruct a metadata table from string representation |
| remove.threshhold | Remove metabolite threshhold |
| remove.unclassified | Removes unclassified features |
| remove.zero.feat | Remove zero features |
| remove.zero.samples | Remove zero samples |
| replace.feat.names | Replace feature names |
| replace.negative.nums | Replace negative abundance values |
| sample.summary.stats | Calculates alpha diversity metrics for each sample in a... |
| simulate.single.factor.data | Simulate univariate -omics data |
| unpack.data.idx | Unpack list-columns of simulated data |
