Man pages for sxmorgan/ansimo
ANalysis and SIMulation of Omics data

batchtools.simulate.dynamicWrapper function for simulations attempting to use batchtools...
characterize.metadataRepresent a metadata table as a single string
check.tbl.dimHelper function to check if nested tibble is labeled or not
correct.metadataCheck and correct types of metadata table
count.to.abundancesTransform counts to relative abundances
dyn.rngCalculates the dynamic range of a given feature
feat.summary.statsCalculates summary statistics for each feature
get.feat.namesRetrieve files with informative feature names
get.metadata.varsGet name and type of metadata variables available in data
join.selected.metadataJoin metadata to data
parse.sample.namesSplit sample names
reconstruct.abundance.tblReconstruct feature abundance table from tidy format
reconstruct.metadataReconstruct a metadata table from string representation
remove.threshholdRemove metabolite threshhold
remove.unclassifiedRemoves unclassified features
remove.zero.featRemove zero features
remove.zero.samplesRemove zero samples
replace.feat.namesReplace feature names
replace.negative.numsReplace negative abundance values
sample.summary.statsCalculates alpha diversity metrics for each sample in a...
simulate.single.factor.dataSimulate univariate -omics data
unpack.data.idxUnpack list-columns of simulated data
sxmorgan/ansimo documentation built on June 26, 2020, 7:59 p.m.