batchtools.simulate.dynamic | Wrapper function for simulations attempting to use batchtools... |
characterize.metadata | Represent a metadata table as a single string |
check.tbl.dim | Helper function to check if nested tibble is labeled or not |
correct.metadata | Check and correct types of metadata table |
count.to.abundances | Transform counts to relative abundances |
dyn.rng | Calculates the dynamic range of a given feature |
feat.summary.stats | Calculates summary statistics for each feature |
get.feat.names | Retrieve files with informative feature names |
get.metadata.vars | Get name and type of metadata variables available in data |
join.selected.metadata | Join metadata to data |
parse.sample.names | Split sample names |
reconstruct.abundance.tbl | Reconstruct feature abundance table from tidy format |
reconstruct.metadata | Reconstruct a metadata table from string representation |
remove.threshhold | Remove metabolite threshhold |
remove.unclassified | Removes unclassified features |
remove.zero.feat | Remove zero features |
remove.zero.samples | Remove zero samples |
replace.feat.names | Replace feature names |
replace.negative.nums | Replace negative abundance values |
sample.summary.stats | Calculates alpha diversity metrics for each sample in a... |
simulate.single.factor.data | Simulate univariate -omics data |
unpack.data.idx | Unpack list-columns of simulated data |
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