Files in syma-research/microTensor
Tensor Decomposition for Longitudinal Microbiomes
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/Rcpp_helper.R
R/betterTaxaNames.R
R/cp_wrapper.R
R/ctf.R
R/estimate_wt.R
R/gradients.R
R/helpers.R
R/helpers_evaluation.R
R/logLik.R
R/microTensor.R
R/microTensor_iter.R
R/pca.R
R/solve.R
R/sourceDir.R
R/updates.R
README.md
data/DIABIMMUNE/11884_20190508-173103-added-month-abx.txt
data/DIABIMMUNE/X_array.RData
data/DIABIMMUNE/df_samples.RData
data/DIABIMMUNE/df_subject.RData
data/DIABIMMUNE/mat_otu_genus.RData
data/DIABIMMUNE/table-matched.tsv
data/DIABIMMUNE/taxonomy.qza/VERSION
data/DIABIMMUNE/taxonomy.qza/checksums.md5
data/DIABIMMUNE/taxonomy.qza/data/taxonomy.tsv
data/DIABIMMUNE/taxonomy.qza/metadata.yaml
data/DIABIMMUNE/taxonomy.qza/provenance/VERSION
data/DIABIMMUNE/taxonomy.qza/provenance/citations.bib
data/DIABIMMUNE/taxonomy.qza/provenance/metadata.yaml
data/FARMM/.DS_Store
data/FARMM/20200619_farmm_metadata.tsv
data/FARMM/X_array.RData
data/FARMM/df_samples.RData
data/FARMM/kraken_results.tsv
data/FARMM/mat_abd.RData
data/FARMM/mat_count.RData
data/HMPII/cor.csv
man/betterGeneraNames.Rd
rmd/0_Format_Data.Rmd
rmd/1_Simulation_TrueMod.Rmd
rmd/2_Simulation_MisMod.Rmd
rmd/3_Simulation_SparseDOSSA.Rmd
rmd/4_FARMM.Rmd
rmd/5_DIABIMMUNE.Rmd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/gradients.cpp
src/gradients.o
src/logLik.cpp
src/logLik.h
src/logLik.o
src/microTensor.so
src/rcpp_hello_world.o
src/solve_x.cpp
src/solve_x.h
src/solve_x.o
