API for szilvajuhos/sarek.pathfindr
Scoring somatic and germline variants for cancer genome analysis
| Global functions | |
|---|---|
| ASCATScatterView | Source code |
| ascatGenomeView | Source code |
| ascatSelectedView | Source code |
| ascat_files | Source code |
| ascat_header | Source code |
| chromosomeView | Source code |
| controlFREECGenomeView | Source code |
| controlFREECScatterView | Source code |
| freecSelectedView | Source code |
| freec_files | Source code |
| freec_header | Source code |
| getCountTable | Source code |
| getEnvVariable | Source code |
| getFusionTable | Source code |
| getInframeHotspots | Source code |
| getRankThreshold | Source code |
| getSNPtable | Source code |
| getSNVhotspots | Source code |
| getTumorGenes | Source code |
| haplotypeCallerFiles | Source code |
| haplotypeCallerOverlap | Source code |
| haplotypeCallerSelectedView | Source code |
| loadGermlineManta | Source code |
| loadHaplotypeCaller | Source code |
| loadMutect2 | Source code |
| loadSomaticManta | Source code |
| loadTumorHaplotypeCaller | Source code |
| load_ascat | Source code |
| load_freec | Source code |
| makelinks | Source code |
| mantaFiles | Source code |
| mantaGermlineSelectedView | Source code |
| mantaTumorSelectedView | Source code |
| mutect2File | Source code |
| mutect2SelectedView | Source code |
| mutect2View | Source code |
| readConfiguration | Source code |
| saveToBed | Source code |
| scoreHaplotypeCaller | Source code |
| scoreManta | Source code |
| scoreMutect2 | Source code |
| scoreStrelka | Source code |
| scoreStrelkaIndels | Source code |
| scoreStrelkaSNVs | Source code |
| score_ascat | Source code |
| score_freec | Source code |
| strelkaFiles | Source code |
| strelkaSelectedView | Source code |
| strelkaView | Source code |
| structuralVariationView | Source code |
| tableWrapper | Source code |
