Man pages for tamartsi/MetaCor
Performs Stratified SNP-trait analysis and combines the results using the MetaCor method
| change.cov.mat.representation | Takes variances and covarianves of effect estimates and puts... |
| check.column.order.input.MetaCor | Check that the input is organized in the right way for... |
| cochran.Q.cor.1 | The modified Cochran's Q test for heterogeneity that accounts... |
| corMeta.fixef | The fixed effects meta-analysis estimator accounting for... |
| corMeta.GLS.1 | The efficient meta-analysis estimator accounting for... |
| corMeta.GLS.invert.mats | The efficient meta-analysis estimator accounting for... |
| det.cov.mat | Calculates the determinants of multiple covairance matrices... |
| estVarComp | Estimate variance components |
| estVarCompCI | Estimate confidence intervals for variance components based... |
| G | A simulated genotype matrix |
| invert.matrices.jointly | Joint inversion of many covariance matrices |
| K | A simple kinship matrix for the simulated genotype matrix. |
| MetaCor | Combine stratum-specific effect estimates in meta-analysis... |
| MetaCor-package | An R package to perform genetic association study with... |
| nullMixedModel | Fits the null model (model without any genotypes) based on... |
| stratLMMTest | Test genetic variants using a stratified linear mixed model |
| test2levelInteraction | Test SNPxstrata interaction when there are only two strata |
| twoStratCovs | Calculates covariance matrices between any two strata |
| W | A simulated design matrix |
| Y | Simulated outcome vector |
