| call_main | Call 'main()' |
| clip_vals | Clips numeric values so that they lie in the range [min_val,... |
| colMaxs | A wrapper for matrixStats::colMaxs() Returns the minimal... |
| colMins | A wrapper for matrixStats::colMins() Returns the minimal... |
| cutree_order | Cut a tree into groups of data in the order of the tree |
| exit | Equivalent to python's sys.exit() Stop the script without... |
| fread | Wrapper for data.table::fread. Returns a data.frame instead... |
| fread_mm | Efficiently read Matrix Market format |
| fread_rownames | Use 'fread()' to read a csv/tsv with row names (e.g. one... |
| fwrite | Wrapper for data.table::fwrite with NA's saved as "NA" instad... |
| fwrite_mm | Efficiently write Matrix Market format |
| gen_seeds | Generate RNG seeds for parallel runs |
| ggpreview | Plot using preview instead of plotting to X device |
| ggrasterize | Rasterize ggplot panel area |
| gps | Get current plot size for jupyter IRKernel |
| grapes-cache_df-grapes | Tries reading a cached dataframe result from the filename on... |
| grapes-cache_matrix-grapes | Tries reading a cached matrix result from the filename on the... |
| grapes-cache_rds-grapes | Tries reading a cached dataframe result from the filename on... |
| grapes-fcache_df-grapes | cache_df that force recreating the cached file |
| grapes-fcache_matrix-grapes | cache_matrix that force recreating the cached file |
| grapes-fcache_rds-grapes | cache_rds that force recreating the cached file |
| load_character | Read a character vector from a file created by save_character |
| load_dataframe | Read a dataframe from a file created by save_dataframe |
| load_matrix | Read a matrix from a file created by save_matrix |
| load_numeric | Read a numeric vector from a file created by save_numeric |
| num_logical_cores | Return the number of the system's logical CPU cores |
| num_physical_cores | Return the number of the system's physical CPU cores |
| pmean | Vectorized mean, similiar to 'pmin' and 'pmax' |
| psum | Vectorized sum, similiar to 'pmin' and 'pmax' |
| read_fastq | Read a fastq file to data frame |
| rowMaxs | A wrapper for matrixStats::rowMaxs() Returns the maximal... |
| rowMins | A wrapper for matrixStats::rowMins() Returns the minimal... |
| run_wide | Similar to mclapply, however ensures a reproducible... |
| save_character | Write a character vector to a file, preserving cell names. |
| save_dataframe | Writes a dataframe to a file, preserving row names. |
| save_matrix | Writes a matrix to a file, preserving row and column names. |
| save_numeric | Write a numeric vector to a file, preserving cell names. |
| scale_x_log2 | Scale x axis by log2 (similar to scale_x_log10) |
| scale_y_log2 | Scale y axis by log2 (similar to scale_y_log10) |
| segment_by | Segment a dataframe according to consecutive identical values... |
| set_plot_size | Set plot size for jupyter IRKernel |
| source_jupyter | Source a jupyter notebook |
| sps | Set plot size for jupyter IRKernel |
| tgplot_add_axis_annotation | Add an axis annotation to a ggplot matrix |
| tgplot_heatmap | Easily plot a matrix as an heatmap using ggplot2 |
| tgutil | tgutil. |
| write_fastq | Write a data frame with "id", "seq" and "qual" to fastq file |
