Man pages for tbrycekelly/TheSource
TheSource: It Will Hold Your Beer
| add.barplot.bar | Add Barplot Bar (auto-stacked) |
| add.boot.conf | Add Bootstrapped Confidence Intervals |
| add.boot.trendline | Add Bootstrapped Trendline |
| add.boxplot.box | Add Boxplot Box |
| add.colorbar | Add Colorbar |
| add.error.bars | Add Error Bars |
| add.error.bars.logx | Add Error Bars (log x) |
| add.error.bars.logy | Add Error Bars (log y) |
| add.exaggerated.axis | Exaggerate (Transform) Data for plotting |
| add.lm.conf | Add Linear Model Confidence Intervals |
| add.lm.trendline | Add Linear Model Trendline |
| add.log.axis | Add Log Axis |
| add.map.arrows | Add Map Arrows |
| add.map.axis | Add Axis to Map |
| add.map.axis.label | Add Axis Label to Map |
| add.map.bathy | Add Map Bathymetry (shaded) |
| add.map.coastline | Add Coastline to Map |
| add.map.contour | Add Map Contours |
| add.map.grid | Add Grid to Map |
| add.map.layer | Add Map Layer |
| add.map.line | Add Map Line |
| add.map.points | Add Map Points |
| add.map.polygon | Add Map Polygon |
| add.map.quiver | Add Quiver Lines |
| add.map.scale | Add Map Scalebar |
| add.map.text | Add Map Text |
| add.regress.conf | Add Bootstrapped Confidence Intervals |
| add.regress.trendline | Add Bootstrapped Trendline |
| add.section.bathy | Add Section Bathymetry |
| add.section.contour | Add Contour to Section Plot |
| add.section.inlay | Add Map Inlay |
| add.section.param | Add Section Parameter |
| add.shade | Add Shaded Box |
| add.violin | Add violin to Plot |
| antarctica1 | Antarctica Polygon (L1) This is a coarse resolution... |
| antarctica2 | Antarctica Polygon (L2) This is a coarse resolution... |
| antarctica3 | Antarctica Polygon (L3) This is a coarse resolution... |
| antarctica4 | Antarctica Polygon (L4) This is a coarse resolution... |
| antarctica5 | Antarctica Polygon (L5) This is a coarse resolution... |
| bathy.antarctic | Antarctic Bathymetry A Matrix containing elevation data taken... |
| bathy.arctic | Arctic Bathymetry A Matrix containing elevation data taken... |
| bathy.global | Global Bathymetry A Matrix containing elevation data taken... |
| bathy.gom | Gulf of Mexico Bathymetry A Matrix containing elevation data... |
| bathy.pacific | Pacific Bathymetry A Matrix containing elevation data taken... |
| build.impute | Impute Missing Values |
| build.section | Build Section |
| build.section.3d | Build Section (3D) |
| build.section.parallel | Build Section with Parallel Processing |
| calc.adiabatic.temp.grad | Calculate Adiabatic Temperature Gradient |
| calc.AOU | Calculate AOU |
| calc.ArSol | Calculate Argon Solubility |
| calc.freezing.point | Calculate Freezing Point in Seawater |
| calc.k | Calculate k |
| calc.k.reuer | Calculate k (Reuer) |
| calc.mld | Calculate MLD |
| calc.N2Sol | Calculate N2 Solubility |
| calc.NeSol | Calculate Neon Solubility |
| calc.O2sol | Calcualte O2 Solubility |
| calc.POstar | Calculate Phosphate Star (PO4Star) |
| calc.pref.PO4 | Calculate Preformed Phosphate |
| calc.ptemp | Calculate Potential Temperature |
| calc.rho | Calculate Density |
| calc.roms.depths.old | Get ROMS z-levels |
| calc.roms.time | Get ROMS Time |
| calc.r.squared | Calculate r-squared |
| calc.schmidt.number | Calculate Schmidt Number |
| calc.seawater.compressibility | Calculate Seawater Compressibility (module) |
| calc.sigma.theta | Calculate Potential Density Anomaly |
| calc.sma | Calculate Simple Moving Average |
| calc.vertex | Calculate extended grid |
| coastline1 | World Coastline Data (L1) This is a coarse resolution... |
| coastline2 | World Coastline Data (L2) This is a coarse resolution... |
| coastline3 | World Coastline Data (L3) This is a coarse resolution... |
| coastline4 | World Coastline Data (L4) This is a coarse resolution... |
| coastline5 | World Coastline Data (L5) This is a coarse resolution... |
| coastlineWorld | World Coastline Data This is a coarse resolution coastline,... |
| coastlineWorldFine | World Coastline Data (High Resolution) This is a coarse... |
| coastlineWorldMedium | World Coastline Data (Medium Resolution) This is a coarse... |
| conv.cond.to.sal | Convert Conductivity to Salinity |
| conv.einstein.to.watt | Convert Light Units |
| conv.kahru.chl | Convert Data to Chl (Kahru) |
| conv.kahru.npp | Convert Data to NPP (Kahru) |
| conv.kahru.sst | Convert Data to SST (Kahru) |
| conv.nasa.chl | Convert Data to Chl (NASA) |
| conv.p.to.d | Convert Pressure to Depth |
| conv.time.excel | Convert Time Excel |
| conv.time.matlab | Convert Time Matlab |
| conv.time.roms | Convert ROMS Time |
| conv.time.unix | Convert Time Unix |
| conv.uM.to.ml | Convert Oxygen Units |
| conv.watt.to.einstein | Convert Light Units |
| cor2cov2 | Cor to Cov |
| correct.beta.names | Correct Beta Sample IDs |
| cv.section | Cross Validate the IDW |
| data.frame | Make dataframe |
| eez | World EEZ Data Global maritime eez boundaries. Creative... |
| exaggerate | Exaggerate (Transform) Data for plotting |
| expand.grid | Expand Grid |
| Geotraces.GA01.Sal | Geotraces' GA01 Salinity and Temperature Data A dataframe... |
| get.bathy | Get Bathymetry |
| get.coast | Load Coastline Data |
| get.day | Get Day |
| get.depth | Retreive depth value from bathymetric grid. |
| get.hour | Get Hour |
| get.julian | Get Julian Day |
| get.map.line | Get Map Line |
| get.minutes | Get Minutes |
| get.month | Get Month |
| get.pal | Get Pal |
| get.regress.vals | Get Bootstrapped Values |
| get.roms.time.old | Get ROMS Time old |
| get.satellite.times | Get Satellite Times |
| get.seconds | Get Seconds |
| get.section.bathy | Get Section Bathymetry |
| get.vel.cmems | Get Velocity (CMEMS) |
| get.vel.globcurrent | Get Velocity (OSCAR) |
| get.vel.oscar | Get Velocity (OSCAR) |
| get.vel.roms | Get Velocity (ROMS) |
| get.year | Get Year |
| get.york.mswd | Get York MSWD |
| get.york.xy | Get York XY |
| greyscale | Greyscale Palette |
| gridBin | Grid via Binning |
| gridIDW | Grid via Inverse Distance Weighting Interpolation |
| grid.interp | Interpolate from fractional index onto grid |
| gridKrig | Grid via Krigging |
| gridNN | Grid via Nearest Neighbor Interpolation |
| gridNNI | Grid via Natural Neighbor Interpolation |
| gridODV | Grid via ODV's Interpolation |
| grid.refinement | Calcuye extended grid |
| grid.subsample | Calculate subsampled grid |
| init.lagrangian.history | Initialize Lagrangian History |
| init.lagrangian.model | Initialize Lagrangian Model |
| init.lagrangian.particles | Initiate Lagrangian Particles |
| integrate.trapezoid | Trapezoidal Integration |
| interp.bilinear | Bilinear Interpolation of a Grid |
| is.inside | Is Inside Polygon |
| is.nan | Is NAN (extension of R base) |
| is.POSIXct | Is POSIXct |
| is.prime | Is Prime? |
| is.within | Is Within |
| jackknife.section | Run Jackknife Analysis on Section |
| lakes1 | World lake Polygon (L1) This is a coarse resolution... |
| lakes2 | World lake Polygon (L2) This is a coarse resolution... |
| lakes3 | World lake Polygon (L3) This is a coarse resolution... |
| lakes4 | World lake Polygon (L4) This is a coarse resolution... |
| lakes5 | World lake Polygon (L5) This is a coarse resolution... |
| load.advection.cmems | Load in CMEMS Advection |
| load.advection.ecco | Load in CMEMS Advection |
| load.advection.globcurrent | Load Advection (globcurrent) |
| load.advection.mitgcm | Load Advection (MITgcm) |
| load.advection.oscar | Load Advection (OSCAR) |
| load.advection.roms | Load in ROMS Advection |
| load.beta | Load Beta Count Data |
| load.beta.icpms | Load Yield Analysis ICPMS Data |
| load.ctd.bottle | Load CTD Bottle Files |
| load.frrf | Load FRRF Datafiles |
| load.ltrans | Load LTRANS Data |
| load.nc | Load NetCDF |
| load.nc.dims | Read NetCDF Variables |
| load.nc.subset | Load NetCDF |
| load.nc.vars | Read NetCDF Variables |
| load.roms.grid | Load in ROMS grid |
| load.roms.physics | Load in ROMS physics |
| load.roms.time | Load in ROMS temporal info |
| load.satellite | Load Satellite File |
| ma | Moving Average |
| make.cex | Calculate point sizes |
| make.map | Make Map |
| make.map2 | Make Map |
| make.map.arctic | Make an Arctic Map |
| make.map.cce | Make Map (CCE) |
| make.map.nga | Make Map (NGA) |
| make.pal | Make Pal |
| make.proj | Make Map Projection |
| make.qual.pal | Make Qualitative Palette |
| make.time | Make Datetime Object |
| model.dunne | Dunne et al Model |
| model.Eilers1988 | Eilers 1988 Light Model |
| model.henson | Henson et al Model |
| model.Jassby1976 | Jassby 1976 Light Model |
| model.kelly | Kelly et al Model |
| model.kelly.sst | Kelly et al Model |
| model.laws | Laws et al Model |
| model.Platt1980 | Platt 1980 Light Curve |
| model.Webb1974 | Webb 1974 Light Curve |
| pad.number | Pad a Number with Leading Zeros |
| parameter.anneal | Parameter Search using Simulated Annealing |
| parameter.descent | Parameter Search |
| parameter.search | Parameter Search |
| parameter.search.parallel | Parameter Search for Parallel Processing |
| parameter.walk | Parameter Search using Random Walk |
| plot.beta.counts | Plot Beta Counts |
| plot.boxplot | Plot Boxplot |
| plot.grid | Plot strcutured grid |
| plot.image | Plot Image |
| plot.quiver | Quiver Plot |
| plot.section | Plot Section |
| plot.TS | Make TS Plot |
| read.satellite | Read Satellite Data |
| rebuild.satellite.index | Rebuild Satellite Index |
| redraw.map | Redraw Map |
| regress.bootstrap | Bootstrap |
| regress.bootstrap.type2 | Bootstrap 2 |
| regress.jackknife | Jackknife |
| regress.jackknife.2 | Jackknife Model II |
| regress.resample | Resample |
| regress.york | York Regression |
| run.advection | Advect Lagrangian Particle |
| run.advection.fast | Advect Lagrangian Particles Fast |
| run.advection.parallel | Advect Lagrangian Particle Model in Parallel |
| sample.frrf | Sample FRRF Datafile A sample of an FRRF datafile for use in... |
| sync.dir | Sync file directory |
| test.function | Get Optimization Test Function |
| test.map.arctic | Test Map of the Arctic |
| test.map.california | Test Map of California |
| test.map.mississippi | Test Map of Mississippi |
| TheSource.version | Get version of TheSource |
| trim.satellite | Tirm Satellite Field |
| wait | System Wait |
| which.closest.time | Which Closest Time |
| which.unique | Which Unique |
| which.within | Which Within |
