Files in tcarruth/MERA
Method Evaluation and Risk Assessment

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.gitignore
DESCRIPTION
MERA.Rproj
NAMESPACE
R/.Rhistory
R/RunShiny.R README.md
inst/shiny_apps/MERA/.Rhistory
inst/shiny_apps/MERA/Source/AI/AI_results.R inst/shiny_apps/MERA/Source/Advice/Advice.R inst/shiny_apps/MERA/Source/App/Data_gate.R inst/shiny_apps/MERA/Source/App/Debug.R inst/shiny_apps/MERA/Source/App/IO.R inst/shiny_apps/MERA/Source/App/Tooltips.R inst/shiny_apps/MERA/Source/App/Update_objects.R inst/shiny_apps/MERA/Source/Data/Data_trim.R inst/shiny_apps/MERA/Source/Data/Fease_Functions.R inst/shiny_apps/MERA/Source/MPs/Custom_MPs.R inst/shiny_apps/MERA/Source/MSE/Calculations.R inst/shiny_apps/MERA/Source/MSE/Redos.R inst/shiny_apps/MERA/Source/Markdown/CondRep.Rmd inst/shiny_apps/MERA/Source/Markdown/DataRep.Rmd inst/shiny_apps/MERA/Source/Markdown/Eval.Rmd inst/shiny_apps/MERA/Source/Markdown/OMRep.Rmd inst/shiny_apps/MERA/Source/Markdown/OM_full_Rep.Rmd inst/shiny_apps/MERA/Source/Markdown/Plan.Rmd inst/shiny_apps/MERA/Source/Markdown/RA.Rmd inst/shiny_apps/MERA/Source/Markdown/SD.Rmd inst/shiny_apps/MERA/Source/Misc/Extra_Figures.R inst/shiny_apps/MERA/Source/Misc/Misc.R inst/shiny_apps/MERA/Source/OM/Backwards.R inst/shiny_apps/MERA/Source/OM/ML2D.R inst/shiny_apps/MERA/Source/OM/Scoping.R inst/shiny_apps/MERA/Source/OM/makeOM.R inst/shiny_apps/MERA/Source/Questionnaire/Data_figs.R inst/shiny_apps/MERA/Source/Questionnaire/Effort_sketching.R inst/shiny_apps/MERA/Source/Questionnaire/Fishery_figs.R inst/shiny_apps/MERA/Source/Questionnaire/Management_figs.R inst/shiny_apps/MERA/Source/Reports/OM_report.R inst/shiny_apps/MERA/Source/SSRA/SSRA.R inst/shiny_apps/MERA/Source/SSRA/StochasticSRA_MSC.R inst/shiny_apps/MERA/Source/Skins/ABNJ.R inst/shiny_apps/MERA/Source/Skins/Generic.R inst/shiny_apps/MERA/Source/Skins/MSC.R inst/shiny_apps/MERA/Source/Skins/Train.R inst/shiny_apps/MERA/global.R
inst/shiny_apps/MERA/rsconnect/shinyapps.io/msc-dlmtool/mera.dcf
inst/shiny_apps/MERA/server.R inst/shiny_apps/MERA/ui.R
inst/shiny_apps/MERA/www/ABNJ.png
inst/shiny_apps/MERA/www/DLMtool.png
inst/shiny_apps/MERA/www/Generic old.png
inst/shiny_apps/MERA/www/Generic.PNG
inst/shiny_apps/MERA/www/MSC.png
inst/shiny_apps/MERA/www/MSC_logo.png
inst/shiny_apps/MERA/www/Train.png
inst/shiny_apps/MERA/www/custom.css
inst/shiny_apps/MERA/www/openMSE.PNG
man/MERA.Rd man/Shiny.Rd
vignettes/.Rhistory
vignettes/Build_Vignette.R vignettes/Build_Vignette_Images.R
vignettes/Data_images/Biology.PNG
vignettes/Data_images/CAA.PNG
vignettes/Data_images/MetaData.png
vignettes/Data_images/cal1.PNG
vignettes/Data_images/cal2.PNG
vignettes/Data_images/reference.PNG
vignettes/Data_images/selectivity.PNG
vignettes/Data_images/timeseries1.PNG
vignettes/Data_images/timeseries2.PNG
vignettes/Disused/FRAME.Rmd
vignettes/Images/DLMtool.png
vignettes/Images/Data_Qs.JPG
vignettes/Images/File_dropdown.JPG
vignettes/Images/Fishery_Q1.JPG
vignettes/Images/Fishery_Qs.JPG
vignettes/Images/Help_dropdown.JPG
vignettes/Images/MERA Diagram.JPG
vignettes/Images/MERA_frontend.JPG
vignettes/Images/Management_Qs.JPG
vignettes/Images/Management_performance_mode.JPG
vignettes/Images/Management_planning_mode.JPG
vignettes/Images/Options_dropdown.JPG
vignettes/Images/Reports_dropdown.JPG
vignettes/Images/Risk_assessment_mode.JPG
vignettes/Images/Settings_dropdown.JPG
vignettes/Images/Status_determination_mode.JPG
vignettes/Images/openMSE.PNG
vignettes/MERA.Rmd vignettes/R/AI_results4paper.R vignettes/R/MSC4paper.R vignettes/R/MSC4vig.R vignettes/R/Q_setup.R vignettes/R/global4UG.R vignettes/Rmds/Acknowledgements/1_People.Rmd vignettes/Rmds/Acknowledgements/2_MERA.Rmd vignettes/Rmds/Acknowledgements/3_DLMtool.Rmd vignettes/Rmds/Acknowledgements/Acknowledgements_M.Rmd vignettes/Rmds/Appendices/1_Appendix_A.Rmd vignettes/Rmds/Appendices/Appendices_M.Rmd vignettes/Rmds/Data/Data.Rmd vignettes/Rmds/Data/Data_M.Rmd vignettes/Rmds/Introductory/1_Overview.Rmd vignettes/Rmds/Introductory/2_Use_Cases.Rmd vignettes/Rmds/Introductory/3_Scientific.Rmd vignettes/Rmds/Introductory/Intro_M.Rmd vignettes/Rmds/Management_Performance/1_Intro_MPerf.Rmd vignettes/Rmds/Management_Performance/2_Method_MPerf.Rmd vignettes/Rmds/Management_Performance/3_Results_MPerf.Rmd vignettes/Rmds/Management_Performance/Management_Performance_M.Rmd vignettes/Rmds/Management_Planning/1_Intro_MPlan.Rmd vignettes/Rmds/Management_Planning/2_Method_MPlan.Rmd vignettes/Rmds/Management_Planning/3_Results_MPlan.Rmd vignettes/Rmds/Management_Planning/Management_Planning_M.Rmd vignettes/Rmds/Menus/1_File.Rmd vignettes/Rmds/Menus/2_Options.Rmd vignettes/Rmds/Menus/3_Settings.Rmd vignettes/Rmds/Menus/4_Reports.Rmd vignettes/Rmds/Menus/5_Help.Rmd vignettes/Rmds/Menus/Menus_M.Rmd vignettes/Rmds/Qs/1_Fishery.Rmd vignettes/Rmds/Qs/2_Management.Rmd vignettes/Rmds/Qs/3_Data.Rmd vignettes/Rmds/Qs/4_Extra.Rmd vignettes/Rmds/Qs/Qs_M.Rmd vignettes/Rmds/References/1_Main.Rmd vignettes/Rmds/References/References_M.Rmd vignettes/Rmds/Risk_Assessment/1_Intro_RA.Rmd vignettes/Rmds/Risk_Assessment/2_Method_RA.Rmd vignettes/Rmds/Risk_Assessment/3_Results_RA.Rmd vignettes/Rmds/Risk_Assessment/Risk_Assessment_M.Rmd vignettes/Rmds/Status_Determination/1_Intro_SD.Rmd vignettes/Rmds/Status_Determination/2_Method_SD.Rmd vignettes/Rmds/Status_Determination/3_Results_SD.Rmd vignettes/Rmds/Status_Determination/Status_Determination_M.Rmd vignettes/Rmds/Support/1_General.Rmd vignettes/Rmds/Support/Support_M.Rmd
vignettes/dat/MSClog.mera
vignettes/dat/MSEobj
vignettes/dat/MSEobj2
vignettes/dat/MSEobj_2.Rdata
vignettes/dat/MSEobj_reb
vignettes/dat/MSEobj_reb2
vignettes/dat/MSEobj_reb_2.Rdata
vignettes/dat/dat.rda
vignettes/dat/dat_ind.rda
vignettes/dat/eff_values.rda
tcarruth/MERA documentation built on Jan. 29, 2021, 3:15 a.m.