Files in teamcgc/TARGETCloud
Scripts for loading and interacting with TARGET data in the cloud
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/getMAFFiles.R
README.Rmd
TARGETCloud.Rproj
docs/articles/TARGET_data_on_BigQuery.html
docs/articles/index.html
docs/authors.html
docs/index.html
docs/index_files/figure-html/pressure-1.png
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/reference/fixColnamesForBigQuery.html
docs/reference/getALLExomeMutationMAF.html
docs/reference/getAMLExomeMutationMAF.html
docs/reference/getNBLExomeMutationMAF.html
docs/reference/getWTExomeMutationMAF.html
docs/reference/index.html
inst/munge_scripts/README.md
inst/munge_scripts/affymetrix_huex_probe2gene.R
inst/munge_scripts/target_aml_file_processing/target_aml_gene_array_tab2csv.R
inst/munge_scripts/target_aml_file_processing/target_aml_methylation_tab2csv.R
inst/munge_scripts/target_aml_file_processing/target_aml_rnaseq_tab2csv.R
inst/munge_scripts/target_ccsk_file_processing/target_ccsk_gene_array_tab2csv.R
inst/munge_scripts/target_ccsk_file_processing/target_ccsk_rnaseq_tab2csv.R
inst/munge_scripts/target_nbl_file_processing/target_nbl_gene_array_tab2csv.R
inst/munge_scripts/target_nbl_file_processing/target_nbl_methylation_tab2csv.R
inst/munge_scripts/target_nbl_file_processing/target_nbl_rnaseq_tab2csv.R
inst/munge_scripts/target_os_file_processing/target_os_expression_tab2csv.R
inst/munge_scripts/target_os_file_processing/target_os_gene_array_tab2csv.R
inst/munge_scripts/target_os_file_processing/target_os_methylation_tab2csv.R
inst/munge_scripts/target_rt_file_processing/target_rt_mirnaseq_tab2csv.R
inst/munge_scripts/target_rt_file_processing/target_rt_rnaseq_tab2csv.R
inst/munge_scripts/target_wt_file_processing/target_wt_cn_tab2csv.R
inst/munge_scripts/target_wt_file_processing/target_wt_gene_array_tab2csv.R
inst/munge_scripts/target_wt_file_processing/target_wt_methylation_tab2csv.R
inst/munge_scripts/target_wt_file_processing/target_wt_mirnaseq_tab2csv.R
inst/munge_scripts/target_wt_file_processing/target_wt_rnaseq_tab2csv.R
inst/munge_scripts/template.scripts/concatenate_27k_array_files_to_one_file.R
inst/munge_scripts/template.scripts/concatenate_450k_array_files_to_one_file.R
inst/munge_scripts/template.scripts/concatenate_all_files_as_one_from_shell.txt
inst/munge_scripts/template.scripts/target_data_gene_array_tab2csv.R
inst/munge_scripts/template.scripts/target_data_methylation_tab2csv.R
inst/munge_scripts/template.scripts/target_data_ngs_expression_tab2csv.R
inst/munge_scripts/template.scripts/target_data_segmentation_tab2csv.R
man/fixColnamesForBigQuery.Rd
man/getALLExomeMutationMAF.Rd
man/getAMLExomeMutationMAF.Rd
man/getNBLExomeMutationMAF.Rd
man/getWTExomeMutationMAF.Rd
vignettes/TARGET_data_on_BigQuery.Rmd
