Files in thomazbastiaanssen/kronos
Microbiome Oriented Circadian Rhythm Analysis Toolkit
.Rbuildignore
.gitignore
CRAN-SUBMISSION
DESCRIPTION
NAMESPACE
NEWS.md
R/AllClasses.R
R/data.R
R/get.R
R/kronos.R
R/plotting.R
README.Rmd
README.md
README_files/PairwiseResults.csv
README_files/RhythmicityResults.csv
README_files/RhythmicityResults2.csv
README_files/figure-gfm/acrogram-1.png
README_files/figure-gfm/customise figure-1.png
README_files/figure-gfm/figures-1.png
README_files/figure-gfm/figures-2.png
README_files/figure-gfm/figures_complex-1.png
README_files/figure-gfm/figures_complex-2.png
README_files/figure-gfm/multi-plots-1.png
README_files/figure-gfm/two-way output-1.png
README_files/figure-gfm/two-way output-2.png
README_files/figure-gfm/two-way output-3.png
README_files/figure-gfm/two-way output-4.png
README_files/figure-gfm/two-way var1 graphs-1.png
README_files/figure-gfm/two-way var1 graphs-2.png
README_files/plots_circadian.pdf
benchmark/00_load_and_clean_WGS.R
benchmark/01a_run_kronos.R
benchmark/01b_run_jtk_cycle.R
benchmark/01c_run_limorhyde.R
benchmark/01d_run_cosinor2.R
benchmark/benchmarking.Rmd
benchmark/benchmarking.md
benchmark/benchmarking.pdf
benchmark/benchmarking_files/figure-gfm/plot acrophases-1.png
benchmark/benchmarking_files/figure-gfm/plot hist-1.png
benchmark/benchmarking_files/figure-gfm/plot hist-2.png
benchmark/benchmarking_files/figure-gfm/plot stats-1.png
benchmark/benchmarking_files/figure-gfm/plot stats-2.png
benchmark/benchmarking_files/figure-gfm/plot tools-1.png
benchmark/benchmarking_files/figure-gfm/plot tools-2.png
benchmark/benchmarking_files/figure-gfm/plot tools-3.png
benchmark/benchmarking_files/figure-latex/plot acrophases-1.pdf
benchmark/benchmarking_files/figure-latex/plot hist-1.pdf
benchmark/benchmarking_files/figure-latex/plot hist-2.pdf
benchmark/benchmarking_files/figure-latex/plot stats-1.pdf
benchmark/wgs_metadata.txt
benchmark/wgs_species.csv
cran-comments.md
data/kronos_demo.RData
inst/CITATION
kronos.Rproj
man/bigdata.Rd
man/bigmeta.Rd
man/build_kronos_formula.Rd
man/delistKronos_groupwise.Rd
man/delistKronos_pairwise.Rd
man/fit_cosinor_model.Rd
man/fit_groupwise_model.Rd
man/fw_kronos.Rd
man/getKronos.Rd
man/getKronos_fit.Rd
man/getKronos_groupwise.Rd
man/getKronos_input.Rd
man/getKronos_pairwise.Rd
man/getKronos_pairwise_p.Rd
man/getKronos_params.Rd
man/getKronos_trace.Rd
man/get_cos_sine.Rd
man/get_vars.Rd
man/gg_kronos_acrogram.Rd
man/gg_kronos_circle.Rd
man/gg_kronos_sinusoid.Rd
man/groupdata.Rd
man/kronos.Rd
man/kronosListToTable.Rd
man/kronosOut-class.Rd
man/kronos_anova.Rd
man/kronos_predict.Rd
man/onevariable.Rd
man/pairwise_cosinor_model.Rd
man/show-kronosOut-method.Rd
man/twowaydata.Rd
