Man pages for thoree/inbred
Different functions related to LR, bootstrap etc
| allGenos | Find all possible genotypes for one individual |
| allGenosPair | Find all possible genotypes for one individual |
| allPairsLR | LR calculations |
| allPairsTable | Blind search table |
| Bi_matrices | Computes Bi, the 9 matrices in the variance formulain... |
| bootPhi | Coverage for bootstrap confidence intervals |
| case | Case determination for a pair of individuals |
| compareCI | Obsolete. Compare kinship confidence intervals |
| dbX12 | Allele frequency databases |
| ELRH | Expected LR for pairwise inbred relationship |
| examplePhi | Example: bootstrap confidence intervals |
| geno1 | Calculates P(G|H) |
| inbred | Inbred package |
| interval | Bootstrap confidence intervals |
| likJ | Likelihood for two Possibly Inbred Individuals as a function... |
| likJStates | Likelihood for for all 9 Jacquard states |
| likPairs | Likelihood for two Possibly Inbred Individuals as a function... |
| likPairsPed | Likelihood for two Possibly Inbred Individuals as a function... |
| likPO | Likelihood for parent offspring pair with mutation |
| LRH | Calculate the 9x9 matrix used to find expected value |
| LRmoments_Jacquard | Exact expectation and variance of likelihood ratios |
| rankProfiles | Ranking profiles of pedigree member |
| readDatabase | Reads database of allele frequencies |
