Man pages for tidymass/massdataset
massdataset
| activate_mass_dataset | Activate a Specific Dataset |
| adjust_confounder | Adjust Confounders in a mass_dataset Object |
| apply-mass_dataset-method | apply |
| arithmetic-mass_dataset | Log-transform Expression Data in 'mass_dataset' Object |
| cash-.mass_dataset | $ method |
| cbind_mass_dataset | cbind mass_data class |
| cbind.mass_dataset | cbind |
| check_annotation_table | Validate Annotation Table Format |
| check_column_name | check_column_name |
| check_mass_dataset | Check Mass Dataset |
| check_mass_dataset_class | Check the Validity of a mass_dataset Object |
| check_object_class | Check Object Class |
| colnames.mass_dataset | colnames |
| convert_mass_dataset2mztab | Convert mass_dataset to mzTab Format |
| convert_mass_dataset2summarizedexperiment | Convert mass_dataset to SummarizedExperiment Object |
| convert_msdial2mass_dataset | Convert MS-Dial Data to mass_dataset Object |
| convert_mztab2mass_dataset | Convert mzTab Data to mass_dataset Object |
| convet_mzmine2mass_dataset | Convert MZmine Data to mass_dataset Object |
| create_mass_dataset | Create a New mass_dataset Object |
| dim.mass_dataset | dim |
| dimnames.mass_dataset | dimnames |
| export_mass_dataset | Export mass_dataset Object to Files |
| export_mass_dataset4metdna | Export mass_dataset Object for MetDNA Analysis |
| export_ms2_data | Export MS2 Data from mass_dataset Object |
| expression_data | Expression data |
| filter-mass_dataset | filter_samples |
| get_massdataset_version | Retrieve the Version of MassDataset Package |
| ggplot_mass_dataset | Create ggplot2 Visualization for a mass_dataset Object |
| head.mass_dataset | head |
| intensity_plot | Create Intensity Plot for a Variable in a mass_dataset Object |
| intersect-mass_dataset-mass_dataset-method | intersect |
| is.na.mass_dataset | is.na |
| left_join_mass_dataset | Left join for mass_dataset |
| length.mass_dataset | length |
| mass_dataset-class | S4 Class Representing a mass_dataset |
| massdataset_conflicts | Conflicts between the massdataset and other packages |
| mass_dataset-extracting | Extract Components from mass_dataset Object |
| massdataset_logo | Display the MassDataset Logo |
| massdataset_packages | List all packages in the massdataset |
| mass_dataset-summary | Get Some Information of a mass_dataset Object |
| merge_mass_dataset | merge_mass_dataset |
| ms2_data-class | write_ms2_data |
| msdial_table | msdial_table feature table |
| mSet-class | An S4 class that stores the MS dataset from MetaboAnalystR... |
| mutate_annotation_table | Update Annotation Table in a mass_dataset Object |
| mutate_mean_intensity | Add Mean Intensity to mass_dataset Object |
| mutate_median_intensity | Add Median Intensity to mass_dataset Object |
| mutate_ms2 | Mutate MS2 Data in mass_dataset Object |
| mutate_rsd | Mutate Relative Standard Deviation (RSD) in mass_dataset... |
| mutate_sample_na_freq | Mutate Sample NA Frequency in mass_dataset Object |
| mutate_sample_na_number | Mutate Sample NA Count in mass_dataset Object |
| mutate_sample_zero_freq | Mutate Sample Zero Frequency in mass_dataset Object |
| mutate_sample_zero_number | Mutate Sample Zero Number in mass_dataset Object |
| mutate_variable_na_freq | Mutate Variable NA Frequency in mass_dataset Object |
| mutate_variable_na_number | Mutate Variable NA Count in mass_dataset Object |
| mutate_variable_zero_freq | Mutate Variable Zero Frequency in mass_dataset Object |
| mutate_variable_zero_number | Mutate Variable Zero Number in mass_dataset Object |
| mzmine_table | zmine feature table |
| names.mass_dataset | names |
| ncol.mass_dataset | ncol |
| nrow.mass_dataset | nrow |
| parse_tidymass_parameter | Parse tidymass_parameter Object to Data Frame |
| rbind_mass_dataset | Row-wise Binding of mass_dataset Objects |
| rbind.mass_dataset | rbind |
| read_mztab | Read mzTab Data File |
| reexports | Objects exported from other packages |
| report_parameters | Generate Parameter Report for mass_dataset Object |
| rownames.mass_dataset | rownames |
| sample_info | Sample information |
| sample_info_note | Sample information note |
| show_missing_values | show_missing_values |
| show_mz_rt_plot | Generate mz-rt Plot for mass_dataset Object |
| show_sample_missing_values | show_sample_missing_values |
| show_variable_missing_values | show_variable_missing_values |
| split_mass_dataset | Split and Update mass_dataset Object Based on Criteria |
| sub-.mass_dataset | [ method |
| summarise_samples | merge samples |
| summary.mass_dataset | summary |
| tail.mass_dataset | tail |
| tidymass_parameter-class | tidymass_parameter S4 Class |
| translate_tidymass_parameter | Translate tidymass_parameter Object to Data Frame |
| update_mass_dataset | Update a mass_dataset Object |
| update_sample_info | Update Sample Information in a mass_dataset Object |
| update_variable_info | Update Variable Information in a mass_dataset Object |
| variable_info | Variable information |
| variable_info_note | Variable information note |
