Man pages for timpeters82/DMRcate-devel
Methylation array and sequencing spatial analysis methods
| changeFDR | Change the individual CpG FDR thresholding for a CpGannotated... |
| cpg.annotate | Annotate Illumina CpGs with their chromosome position and... |
| CpGannotated-class | An object summarising individual CpG sites fitted to a given... |
| dmrcate | DMR identification |
| DMRcate-internal | Internal DMRcate objects and functions |
| DMRcate-package | DMR calling from bisulfite sequencing and Illumina array data |
| DMResults-class | Initial storage object for called DMRs - class |
| DMR.plot | Plotting DMRs |
| extractRanges | Create a GRanges object from 'dmrcate' output. |
| getCollapsedBetas | Extract a beta matrix from a CpGannotated object. |
| rmSNPandCH | Filter probes |
| sequencing.annotate | Annotate a bisulfite sequencing experiment (WGBS or RRBS)... |
