Files in tkolisnik/Rf2pval
A comprehensive approach to genomic analysis using scikit-learn's Random Forest models and rank-based feature reduction in R
.DS_Store
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/Rf2pval.R
R/calculatePvalues.R
R/calculateSHAP.R
R/demo_data.R
R/environmentSetup.R
R/generateFigures.R
R/loadDatasets.R
R/modelTrainingTuningFittingTesting.R
README.md
data/demo_rnaseq_data.RData
man/Rf2pval-package.Rd
man/calculate_SHAP_values.Rd
man/calculate_feature_importances.Rd
man/calculate_full_set_pvalue.Rd
man/calculate_quantiles.Rd
man/calculate_ranked_based_pvalues.Rd
man/create_feature_matrix.Rd
man/demo_rnaseq_data.Rd
man/fit_and_evaluate_rf.Rd
man/generate_fi_rank_plot.Rd
man/generate_pi_ECDF_plot.Rd
man/generate_pi_histogram.Rd
man/generate_shap_plots.Rd
man/setup_python_pkgs.Rd
man/tune_and_train_rf_model.Rd
path
vignettes/Rf2pal-vignette.pdf
vignettes/Rf2pval-vignette.Rmd
vignettes/images/demo_ecdf_plot.jpeg
vignettes/images/demo_enrich_plot.jpeg
vignettes/images/demo_fiplot_focused.jpeg
vignettes/images/demo_fiplot_full.jpeg
vignettes/images/demo_gostplot_mhplot.jpeg
vignettes/images/demo_gostplot_mhplot_with_table.jpeg
vignettes/images/demo_pihist_plot.jpeg
vignettes/images/demo_shap_plot.jpeg
vignettes/images/demo_shap_plot_2_full.jpeg
vignettes/images/demo_signif_gprofiler_resplot.jpeg
