Files in tpbilton/GUSMap
Genotyping Uncertainty with Sequencing Data and Linkage Mapping (GUSMap)
.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
GUSMap.Rproj
LICENSE
NAMESPACE
NEWS.md
R/BC.R
R/FS.R
R/GUSMap-package.R
R/IC.R
R/Manuka11.R
R/OPGP.R
R/RcppExports.R
R/addBIsnps.R
R/addSNPs.R
R/createLG.R
R/isValue.R
R/makeBC.R
R/makeFS.R
R/makeIC.R
R/maskSNP.R
R/mergeLG.R
R/mfun.R
R/orderLG.R
R/plotChr.R
R/plotLG.R
R/plotLM.R
R/plotSyn.R
R/print.R
R/removeLG.R
R/removeSNP.R
R/rfEst.R
R/rf_2pt.R
R/simulate.R
R/wrappers.R
R/writeLM.R
R/zzz.R
README.md
cleanup.sh
configure
configure.ac
flake.lock
flake.nix
inst/CITATION
inst/REFERENCES.bib
inst/doc/Introduction_BC.R
inst/doc/Introduction_BC.Rmd
inst/doc/Introduction_BC.html
inst/doc/Introduction_FS.R
inst/doc/Introduction_FS.Rmd
inst/doc/Introduction_FS.html
inst/doc/Introduction_IC.R
inst/doc/Introduction_IC.Rmd
inst/doc/Introduction_IC.html
inst/extdata/Manuka_chr11.vcf
inst/extdata/Manuka_chr11_ped.csv
man/BC.Rd
man/FS.Rd
man/GUSMap-package.Rd
man/IC.Rd
man/Manuka11.Rd
man/cash-addBIsnps.Rd
man/cash-addSNPs.Rd
man/cash-computeMap.Rd
man/cash-createLG.Rd
man/cash-maskSNP.Rd
man/cash-mergeLG.Rd
man/cash-orderLG.Rd
man/cash-plotChr.Rd
man/cash-plotLG.Rd
man/cash-plotLM.Rd
man/cash-plotSyn.Rd
man/cash-print.Rd
man/cash-removeLG.Rd
man/cash-removeSNP.Rd
man/cash-rf_2pt.Rd
man/cash-writeLM.Rd
man/makeBC.Rd
man/makeFS.Rd
man/makeIC.Rd
man/mfun.Rd
man/simFS.Rd
src/Makevars.in
src/Makevars.win
src/RcppExports.cpp
src/em.c
src/likelihoods.c
src/probFun.c
src/probFun.h
src/score.c
src/viterbi.cpp
test/createLG.cpp
test/simDS.vcf.ra.tab
test/test.Rdata
test/test_GUSMap.txt
test/test_der.R
test/test_der.Rdata
test/testcode.R
test/viterbi.cpp
test/writeLM_v2.R
vignettes/Introduction_BC.Rmd
vignettes/Introduction_FS.Rmd
vignettes/Introduction_IC.Rmd
