API for ttdtrang/cdev-paper
cdev: a ground-truth based measure to evaluate RNA-seq normalization methods
| Global functions | |
|---|---|
| auroc | Source code |
| cdev | Source code |
| cdev.from.scaling.factors | Source code |
| cdev.generic | Source code |
| condNumber | Source code |
| condNumber.norm | Source code |
| cv | Source code |
| de.test.DESeq | Source code |
| de.test.edgeR | Source code |
| de.test.limma | Source code |
| fast.condNumber | Source code |
| fast.sv | Source code |
| geom.mean | Source code |
| logFC | Source code |
| norm.minmax | Source code |
| normalize.by.deseq | Source code |
| normalize.by.poissonseq | Source code |
| normalize.by.qsmooth | Source code |
| normalize.by.tmm | Source code |
| normalize.vec | Source code |
| pinv.svd | Source code |
| plot.heatmap | Source code |
| plot.matrix | Source code |
| plot.pcp | Source code |
| project.pca | Source code |
| rank1.residuals | Source code |
| relative_log_expression | Source code |
| simulate.counts | Source code |
| simulate.counts.continuousfc | Source code |
| simulate.counts.varyingfc | Source code |
| sv | Source code |
