API for tylerhether/HMMancestry
R package using the Forward-Backward algorithm to infer genotypes, recombination hotspots, and gene conversion tracts from low-coverage next-generation sequence data
| Global functions | |
|---|---|
| check_values | Source code |
| cross_vs_noncross | Source code |
| est_maxLnL | Man page Source code |
| fb_diploid | Man page Source code |
| fb_haploid | Man page Source code |
| id_recombination_events | Man page |
| infer_tracts | Man page Source code |
| make_parents | Man page Source code |
| mutate_snps | Source code |
| recombine | Man page Source code |
| recombine_index | Man page Source code |
| sim_en_masse | Man page Source code |
| sim_tetrad | Man page Source code |
| simulate_coverage | Man page Source code |
| switch_values | Source code |
