Files in tylerhether/HMMancestry
R package using the Forward-Backward algorithm to infer genotypes, recombination hotspots, and gene conversion tracts from low-coverage next-generation sequence data
.Rbuildignore
.gitignore
DESCRIPTION
HMMancestry.pdf
HMMancestry_2.1.tar.gz
Makefile
NAMESPACE
R/Est_max_LnL.R
R/RcppExports.R
R/infer-recom.R
R/simulate.R
README.md
inst/testdata/exampleEmpiricaldata.txt
inst/tests/.DS_Store
inst/tests/test.all.R
inst/tests/testthat/helper-HMMancestry.R
inst/tests/testthat/test_simulation.R
logo.pdf
logo.png
logo.svg
man/est_maxLnL.Rd
man/fb_diploid.Rd
man/fb_haploid.Rd
man/id_recombination_events.Rd
man/infer_tracts.Rd
man/make_parents.Rd
man/recombine.Rd
man/recombine_index.Rd
man/sim_en_masse.Rd
man/sim_tetrad.Rd
man/simulate_coverage.Rd
src/.DS_Store
src/FB.cpp
src/FB.o
src/HMMancestry.so
src/RcppExports.cpp
src/RcppExports.o
