Man pages for tylerhether/HMMancestry
R package using the Forward-Backward algorithm to infer genotypes, recombination hotspots, and gene conversion tracts from low-coverage next-generation sequence data
| est_maxLnL | Numerically Estimating the Maximum LnL parameter values from... |
| fb_diploid | Inferring hidden ancestry states from diploids |
| fb_haploid | Inferring hidden ancestry states from haploids |
| id_recombination_events | Identify crossover points from state sequences and snp... |
| infer_tracts | Identify crossover, non-crossover, and gene conversion tracts |
| make_parents | Simulate haploid parental genotypes along a chromosome |
| recombine | Simulate recombination (crossovers or non-crossovers) along a... |
| recombine_index | Simulate recombination points along a chromosome. |
| sim_en_masse | Simulate random spores en masse |
| sim_tetrad | Simulate recombination across a given number of meiosis... |
| simulate_coverage | Simulate sequencing across simulated data: |
