uc-bd2k/iPAS: integrative Pathway Activity Signatures (iPAS)
This package provides functions for calculating pathway scores based on integrative Pathway Activity Signatures (iPAS). These signatures were created using the LINCS L1000 differential expression dataset. We integrate data across twelve cell lines and use machine learning methods to find genes whose expression consistently reacts to pathway perturbation.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Nicholas Clark |
| Maintainer | Nicholas Clark <nicholas.clark00@gmail.com>, Mario Medvedovic <medvedm@ucmail.uc.edu> |
| License | GPL-3 |
| Version | 0.1.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
