Man pages for uc-bd2k/iPAS
integrative Pathway Activity Signatures (iPAS)
| ens_weights_no_intercept | Ensemble pathway weights |
| gene_meta | Gene metadata for all 978 measured L1000 genes |
| iPAS_bar | Produce bar plots of top iPAS pathways |
| iPAS_density | Produce a density plot of iPAS permutation scores for a given... |
| iPAS_density_facet | Produce density plots of iPAS permutation scores for a given... |
| iPAS_enrich | Calculate iPAS pathway scores for a given input signature |
| iPAS_heatmap | Produce a heatmap of iPAS pathway scores |
| iPAS_list | Individual pathway activity signatures (iPAS) |
| iPAS_score_perm | Create a null distribution of iPAS pathway scores using... |
| kegg_meta | KEGG pathway metadata |
| load_iPAS | Load integrative Pathway Activity Signatures (iPAS) |
| load_iPAS_ensemble | Load Ensemble Pathway Activity Signatures (iPAS) |
| pipe | Pipe operator |
| rnaseq_input_rand | Random RNA-seq data to use for examples |
