Files in ucsf-ferguson-lab/syndRomics
Component loading interpretation and visualization with syndromic plots
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/user_functions.R
R/utility_functions.R
README.md
SyndRomics.Rproj
inst/REFERENCES.bib
man/VAF_plot.Rd
man/barmap_commun.Rd
man/barmap_loading.Rd
man/boot_pca_sample.Rd
man/boot_pca_sample.prcomp.Rd
man/boot_pca_sample.princals.Rd
man/category_quant_plot.Rd
man/component_similarity.Rd
man/extract_category_quant_plot.Rd
man/extract_cc.Rd
man/extract_loadings.Rd
man/extract_rmse.Rd
man/extract_s.Rd
man/extract_syndromic_plot.Rd
man/heatmap_loading.Rd
man/new_syndromics.Rd
man/pc_stability.Rd
man/permut_pc_test.Rd
man/permut_pca_D.Rd
man/permut_pca_D.prcomp.Rd
man/permut_pca_D.princals.Rd
man/permut_pca_V.Rd
man/permut_pca_V.prcomp.Rd
man/permut_pca_V.princals.Rd
man/plot.syndromics.Rd
man/stand_loadings.Rd
man/syndromic_plot.Rd
tests/testthat.R
tests/testthat/test-syndromic_plot.R
vignettes/figure/PC1.pdf
vignettes/figure/boot 1-1.png
vignettes/figure/boot 2-1.png
vignettes/figure/permuted VAF-1.png
vignettes/figure/s plot 1-1.png
vignettes/figure/s plot 10-1.png
vignettes/figure/s plot 11-1.png
vignettes/figure/s plot 12-1.png
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vignettes/figure/s plot 18-1.png
vignettes/figure/s plot 19-1.png
vignettes/figure/s plot 2-1.png
vignettes/figure/s plot 20-1.png
vignettes/figure/s plot 21-1.png
vignettes/figure/s plot 22-1.png
vignettes/figure/s plot 22.0-1.png
vignettes/figure/s plot 23-1.png
vignettes/figure/s plot 24-1.png
vignettes/figure/s plot 25-1.png
vignettes/figure/s plot 26-1.png
vignettes/figure/s plot 3-1.png
vignettes/figure/s plot 4-1.png
vignettes/figure/s plot 5-1.png
vignettes/figure/s plot 6-1.png
vignettes/figure/s plot 7-1.png
vignettes/figure/s plot 8-1.png
vignettes/figure/s plot 9-1.png
vignettes/using_syndRomics.Rmd
vignettes/using_syndRomics.Rmd.orig
vignettes/using_syndRomics.html
