Man pages for ucsf-ferguson-lab/syndRomics
Component loading interpretation and visualization with syndromic plots
| barmap_commun | Barmap of communalities |
| barmap_loading | Barmap of standardized loadings |
| boot_pca_sample | Generic Bootstrapping PCA sample |
| boot_pca_sample.prcomp | Bootstrapping PCA sample prcomp method |
| boot_pca_sample.princals | Bootstrapping PCA sample princals method |
| category_quant_plot | Category quantification plot |
| component_similarity | Extracts different component/factor similarity (matching)... |
| extract_category_quant_plot | Extract the category quantification plot |
| extract_cc | Extracts Coefficient of congruence |
| extract_loadings | extract loadings |
| extract_rmse | Extracts root mean square error (RMSE) |
| extract_s | Extracts Cattell's S-statistic |
| extract_syndromic_plot | Extract the syndromic plot |
| heatmap_loading | Heatmap of standardized loadings |
| new_syndromics | syndromic class constructor |
| pc_stability | PC stability by nonparametric bootstrapping |
| permut_pca_D | Generic for permutating PCA using permD method |
| permut_pca_D.prcomp | Permutation PCA sample permD prcomp |
| permut_pca_D.princals | Permutation PCA sample permD princals |
| permut_pca_V | Generic for permuting PCA using permV method |
| permut_pca_V.prcomp | Permutation PCA sample permV prcomp |
| permut_pca_V.princals | Permutation PCA sample permV princals |
| permut_pc_test | permutation test of PCA |
| plot.syndromics | Method to plot results from pc_stability or permut_pca_test |
| stand_loadings | standardized loadings |
| syndromic_plot | Syndromic plot |
| VAF_plot | Variance accounted for plot |
