Files in umccr/woofr
Helper R Functions for woof
.Rbuildignore
.bumpversion.cfg
.github/.gitignore
.github/workflows/deploy.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/cloud.R
R/compare.R
R/globals.R
R/hrd.R
R/multiqc.R
R/pcgr.R
R/qc_summary.R
R/utils.R
R/woofr-package.R
README.md
conda/env/condabuild.yaml
conda/recipe/build.sh
conda/recipe/meta.yaml
inst/extdata/circos/circos_sv.conf
inst/extdata/circos/gaps.txt
inst/extdata/circos/ideogram.conf
inst/extdata/cnv/sample_A.purple.gene.cnv
inst/extdata/cnv/sample_B.purple.cnv.gene.tsv
inst/extdata/genes/README.md
inst/extdata/genes/umccr_cancer_genes.latest.genes
inst/extdata/snv/count_vars.txt
inst/extdata/snv/eval_stats.tsv
inst/extdata/sv/eval_metrics.tsv
inst/extdata/sv/fpfn.tsv
inst/rmd/woof_compare.Rmd
man/check_comparison_input.Rd
man/compare_purple_gene_files.Rd
man/get_circos.Rd
man/guess_file_type.Rd
man/hrd_cmp.Rd
man/lf.Rd
man/list_s3_objects.Rd
man/manta_isec.Rd
man/manta_isec_stats.Rd
man/merge_umccrise_outputs.Rd
man/multiqc_cmp.Rd
man/pcgr_cmp.Rd
man/prep_manta_vcf.Rd
man/qc_sum_cmp.Rd
man/read_manta_vcf.Rd
man/read_purple_gene_file.Rd
man/read_snv_count_file.Rd
man/read_snv_eval_file.Rd
man/read_sv_eval_file.Rd
man/read_sv_fpfn_file.Rd
man/tree.Rd
man/umccrise_outputs.Rd
man/woofr-package.Rd
nogit/sandbox.R
setup-pkg.R
tests/testthat.R
tests/testthat/test_compare_counts.R
woofr.Rproj
