API for usnistgov/peprr
R pepr utilities
| Global functions | |
|---|---|
| .check_db_table | Source code |
| .convert_percents | Source code |
| .depth_to_df | Source code |
| .genomic_purity_df | Source code |
| .get_chrom_names | Source code |
| .get_dataset_name | Source code |
| .get_low_pur_metrics | Source code |
| .met_df | Source code |
| .parse_depth_name | Source code |
| .parse_sam_report | Source code |
| .parse_stat_name | Source code |
| .parse_varscan_filename | Source code |
| .read_metrics | Source code |
| .read_varscan | Source code |
| .replace_chrom_names | Source code |
| .vcf_to_df | Source code |
| contam_counts_figure | Source code |
| contam_distribution_figure | Source code |
| contam_heatmap_figure | Source code |
| contam_point_line_figure | Source code |
| createPeprDB | Source code |
| create_homogeneity_df | Source code |
| create_pairwise_homogeneity_df | Source code |
| gel_indel_metrics | Source code |
| homogeneity_freq_figure | Source code |
| homogeneity_point_line_figure | Source code |
| homogeneity_pvalue_figure | Source code |
| homogeneity_sig_table | Source code |
| indel_metrics | Source code |
| init_peprDB | Source code |
| load_consensus | Source code |
| load_depth | Source code |
| load_fastqc | Source code |
| load_metrics | Source code |
| load_peprMeta | Source code |
| load_pilon | Source code |
| load_purity | Source code |
| load_varscan | Source code |
| low_pur_metrics | Source code |
| low_pur_metrics_figure | Source code |
| low_purity_table | Source code |
| pilon_changes_table | Source code |
| readFastQC | Source code |
| seq_summary_table | Source code |
